Table 2.

Genes differentially expressed (P < 0.05) in 35S:ABF3 transgenic plants

Line	Probe Set ID	AGI	Annotation	M	P
48	244964_at	AtCg00580	PSII cytochrome b559 (psbE)*	0.73	1.18 × 10-2
	245608_at	At4g14350	Protein kinase family protein	-1.54	1.27 × 10-6
	253263_at	At4g34000	ABA-responsive elements-binding factor 3 (ABF3)	3.35	2.09 × 10-11
	253399_at	At4g32850	Nuclear poly(A) polymerase (nPAP)	0.7	2.22 × 10-2
	256683_at	At3g52220	Expressed protein	-0.47	4.43 × 10-2
	256940_at	At3g30720	Expressed protein	1.68	3.25 × 10-2
	262719_at	At1g43590	Transposable element gene	2.02	3.12 × 10-6
57	253263_at	At4g34000	ABA-responsive elements-binding factor 3 (ABF3)	4.44	2.58 × 10-14
59	244992_s_at	AtCg00900/AtCg01240	Ribosomal protein s7 (rps7)*	-1.68	4.80 × 10-3
	244996_at	AtCg00160	Ribosomal protein s2 (rps2)*	-1.28	9.05 × 10-3
	245018_at	AtCg00520	Protein required for photosystem I assembly and stability (ycf4)*	-1.22	9.22 × 10-3
	245019_at	AtCg00530	Hypothethical protein (ycf10/cemA)*	-1.34	1.48 × 10-2
	245020_at	AtCg00540	Cytochrome f apoprotein (petA)*	-1.21	1.25 × 10-2
	253263_at	At4g34000	ABA-responsive elements-binding factor 3 (ABF3)	2.04	1.35 × 10-6
	261888_at	At1g80800	Pseudogene, 40S ribosomal protein S12 (rps12B)	-0.92	2.31 × 10-2
	264683_at	At1g65580	Inositol or phosphatidylinositol phosphatase/FRAGILE FIBRE 3 (FRA3)	-0.71	2.34 × 10-2

M is log2 fold change and P is FDR-adjusted P-value for Student's t-test.

* indicates genes encoded by the chloroplast genome.