Table 7.
Genes showing enhanced regulation in 35S:ABF3 with predicted function in RNA processing
| 2 h | 24 h | |||||
|---|---|---|---|---|---|---|
| Probe Set ID | AGI | Annotation | Control | 35S:ABF3 | Control | 35S:ABF3 |
| Splicing and splicing-related | ||||||
| 262110_at | At1g02840 | Pre-mRNA splicing factor SF2/SR1 protein | -1.731 | |||
| 263035_at | At1g23860 | Splicing factor RSZp21 (RSZP21) | -1.272 | |||
| 262295_at | At1g27650 | U2 snRNP auxiliary factor small subunit, putative (AtU2AF35A) | -1.129 | |||
| 262931_at | At1g65700 | Small nuclear ribonucleoprotein, putative | 1.386 | |||
| 267102_at | At2g41500 | LACHESIS (LIS)/related to yeast splicing factor PRP4 | -1.260 | |||
| 252182_at | At3g50670 | U1 small nuclear ribonucleoprotein 70 (U1-70k) | -1.525 | |||
| 251798_at | At3g55460 | SC35-like splicing factor, 30 kD (SCL30) | -1.048 | |||
| 253668_at | At4g30220 | Small nuclear ribonucleoprotein F (RUXF), putative | 1.057 | |||
| 249870_at | At5g23080 | SWAP domain-containing protein/TOUGH (TGH) | -1.476 | |||
| 246924_at | At5g25060 | RNA recognition motif (RRM)-containing protein | -1.043 | |||
| 248369_at | At5g52040 | Arginine/serine-rich splicing factor RSP41 (RSP41) | -1.009 | |||
| Nucleocytoplasmic transport | ||||||
| 257817_at | At3g25150 | Nuclear transport factor 2 (NTF2) family protein | -1.316 | |||
| Deadenylation | ||||||
| 252679_at | At3g44260 | CCR4-NOT transcription complex protein, putative | 2.108 | 3.479 | 3.354 | |
| Other | ||||||
| 262804_at | At1g20880 | RNA recognition motif (RRM)-containing protein | -1.335 | |||
| 261988_at | At1g33680 | KH domain-containing protein | -1.123 | |||
| 254355_at | At4g22380 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 1.617 | |||
| 246088_at | At5g20600 | Expressed protein | -1.145 | |||
| 247004_at | At5g67570 | Pentatricopeptide (PPR) repeat-containing protein | -1.349 | |||
Values are log2 fold changes.