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Polymorphisms in the Affymetrix GeneChip® Human Mapping 50K Xba Array in Genes Hypothesized to be Associated with Tuberculosis Pathogenesis
| Gene | # SNPs | Gene | # SNPs | Gene | # SNPs |
|---|---|---|---|---|---|
| IL-4 | 4 | GATA3 | 68 | IFN-α | 5 |
| IL-6 | 11 | TRAF6 | 3 | CYLD | 13 |
| IL-8 | 5 | HLA-DQ | 5 | BCL10 | 1 |
| IL-10 | 4 | HLA-DR | 5 | A20 | 28 |
| IL-12 | 28 | VDR | 2 | TAK1 | 7 |
| TNF | 191 | NOD2/CARD15 | 1 | STAT4 | 9 |
| IFN-γ | 18 | NFκ b | 50 | IL-23 | 6 |
| IL-1β | 2 | STAT1 | 3 | TLR4 | 21 |
| RunX | 66 | TGF-β | 105 |
The number of SNPs tested in each gene is provided. There were a total of 661 SNPs.
