Table 2.
Results of Kishino–Hasegawa, Templeton, and winning-sites tests
| Clade | Shortest tree with clade | Shortest tree without clade | KH-P | Templeton | Winning sites | -Ln likelihood with clade | -Ln likelihood without clade | KH-ML |
|---|---|---|---|---|---|---|---|---|
| Marsupial clades | ||||||||
| All except Didelphis | 3724 (2) | 3732 | 0.5737 | 0.6158 | 0.7078 | 18921.9577 | 18943.7639 | 0.3597 |
| All except Dromiciops | 3742 | 3724 (2) | 0.0605 | 0.1000 | 0.0405* | 18943.5070 | 18921.9577 | 0.1998 |
| Ameridelphia | 3732 | 3724 (2) | 0.5737 | 0.6158 | 0.7078 | 18937.6790 | 18921.9577 | 0.3862 |
| Australidelphia | 3724 (2) | 3727 | 0.6311 | 0.6714 | 0.8676 | 18921.9577 | 18926.6137 | 0.7369 |
| Notoryctes + Diprotodontia | 3730 (2) | 3724 (2) | 0.0488* | 0.0769 | 0.0886 | 18923.3736 | 18921.9577 | 0.8575 |
| Diprotodontia + Peramelina | 3731 (3) | 3724 (2) | 0.2543 | 0.3161 | 0.3179 | 18932.0427 | 18921.9577 | 0.5595 |
| Peramelina + Dasyuromorphia | 3724 (2) | 3728 (2) | 0.4725 | 0.5305 | 0.5903 | 18921.9577 | 18931.3186 | 0.5900 |
| Notoryctes + Dasyuromorphia | 3729 (4) | 3724 (2) | 0.3654 | 0.4292 | 0.4690 | 18931.3186 | 18921.9577 | 0.5900 |
| Placental clades | ||||||||
| Africana | 3724 (2) | 3753 (6) | 0.0204* | 0.0429* | 0.0248* | 18921.9577 | 19003.3833 | 0.0004* |
| Altungulata | 3778 (2) | 3724 (2) | <0.0001* | <0.0001* | <0.0001* | 19086.8585 | 18921.9577 | <0.0001* |
| Anagalida | 3775 (2) | 3724 (2) | <0.0001* | <0.0001* | <0.0001* | 19045.6117 | 18921.9577 | <0.0001* |
| Archonta | 3754 (2) | 3724 (2) | 0.0317* | 0.0614 | 0.0290* | 18996.6624 | 18921.9577 | 0.0084* |
| Archonta (-bats) | 3728 (10) | 3724 (2) | 0.4656 | 0.5200 | 0.5993 | 18922.8399 | 18921.9577 | 0.9063 |
| Cetartiodactyla | 3724 (2) | 3744 (10) | 0.0709 | 0.0995 | 0.0969 | 18921.9577 | 18962.4634 | 0.0791 |
| Edentata | 3740 (4) | 3724 (2) | 0.2232 | 0.2579 | 0.3283 | 18939.9958 | 18921.9577 | 0.3295 |
| Epitheria I | 3731 (12) | 3724 (2) | 0.5135 | 0.5622 | 0.6662 | 18937.9144 | 18921.9577 | 0.1871 |
| Epitheria II | 3753 (4) | 3724 (2) | 0.0116* | 0.0239* | 0.0235* | 18944.7378 | 18921.9577 | 0.1507 |
| Ferungulata | 3728 (2) | 3724 (2) | 0.5147 | 0.5676 | 0.6752 | 18921.9577 | 18926.9409 | 0.7198 |
| “Flying primate” | 3763 (1) | 3724 (2) | 0.0075* | 0.0137* | 0.0236* | 19045.1750 | 18921.9577 | 0.0003* |
| Glires | 3724 (2) | 3727 (6) | 0.7633 | 0.7992 | 0.6617 | 18921.9577 | 18932.9675 | 0.5426 |
| Hyracoidea + Perissodactyla | 3800 (2) | 3724 (2) | <0.0001* | <0.0001* | <0.0001* | 19155.6222 | 18921.9577 | <0.0001* |
| Paenungulata | 3724 (2) | 3735 (6) | 0.1689 | 0.2275 | 0.2229 | 18921.9577 | 18943.0474 | 0.0602 |
| Tethytheria | 3730 (2) | 3724 (2) | 0.1393 | 0.1883 | 0.2085 | 18930.8171 | 18921.9577 | 0.5398 |
| Ungulata I | 3785 (2) | 3724 (2) | <0.0001* | <0.0001* | <0.0001* | 19072.9924 | 18921.9577 | <0.0001* |
| Ungulata II | 3787 (2) | 3724 (2) | <0.0001* | <0.0001* | <0.0001* | 19118.4440 | 18921.9577 | <0.0001* |
| Volitantia | 3785 (50) | 3724 (2) | 0.0538 | 0.0879 | 0.1790 | 19002.5185 | 18921.9577 | 0.0208* |
Composition of superordinal clades is as follows: Ameridelphia = Didelphimorphia + Paucituberculata; Australidelphia = Dasyuromorphia + Diprotodontia + Microbiotheria + Notoryctemorphia + Peramelina; Africana = Macroscelidea + Paenungulata + Tubulidentata; Altungulata = Paenungulata + Perissodactyla; Anagalida = Glires + Macroscelidea; Archonta = Chiroptera + Dermoptera + Primates + Scandentia; Cetartiodactyla = Artiodactyla + Cetacea; Epitheria I = all placentals except Xenarthra; Epitheria II = Pholidota + Xenarthra as sister-group to other placentals; Ferungulata = Carnivora + Cetartiodactyls + Perissodactyla; “Flying Primate” = Dermoptera + Megachiroptera + Primates; Glires = Lagomorpha + Rodentia; Paenungulata = Hyracoidea + Proboscidea + Sirenia; Tethytheria = Proboscidea + Sirenia; Ungulata I = Cetartiodactyla + Paenungulata + Perissodactyla + Tubulidentata; Ungulata II = Cetartiodactyla + Paenungulata + Perissodactyla; Volitantia = Chiroptera + Dermoptera. Additional placental clades that could not be accepted or rejected based on statistical tests include Insectivora, Artiodactyla, and Chiroptera. Among marsupials, Dromiciops + Diprotodontia and Notoryctes + Peramelina were evaluated but could not be accepted or rejected. Asterisks indicate significant at P = 0.05. KH-P, Kishino–Hasegawa test for parsimony; KH-ML, Kishino–Hasegawa test for maximum likelihood.