Fig. 12.
Total search time for five geometric searches as a function of discrepancy cutoff. The search labeled GEOM is purely geometric. Other searches are identical to the previous search with the exception of one added constraint as indicated: SEQ sequential constraint; 1 BP one basepair constraint; 2 BP two basepair constraints; 3 BP three basepair constraints. The PDB file 1s72 was searched. Note the logarithmic scale on the vertical axis