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. 2010 Jan 22;76(6):1913–1925. doi: 10.1128/AEM.01753-09

TABLE 2.

Summary of allelic profiles and resulting STs for both MLST schemesa

Isolate hostb Allelic profile (7 loci; pubMLST)c ST for 7 loci Allelic profile (9 loci; this study)d ST for 9 loci eBURST result for 12/16 shared alleles Country (state) Collection datee
cco001_S* 33-38-30-167-104-43-17 1467 1-1-1-1-1-1-1-1-1 1 USA 2/27/2001
cco002_S* 33-38-30-167-104-44-36 3859 1-1-1-2-1-2-1-1-2 2 CC9 USA 1/24/2001
cco003_S* 33-39-30-82-104-43-17 828 1-1-1-3-1-3-1-2-3 3 USA 2/12/2001
cco004_S* 53-321-44-82-104-35-36 3860 1-1-1-4-2-4-2-1-4 4 USA 3/1/2001
cco005_S* 33-38-30-78-104-44-36 3861 1-2-1-2-1-1-1-1-2 5 CC9 USA 2/6/2001
cco006_S* 33-38-30-82-104-35-36 890 1-1-1-4-2-5-1-1-5 6 USA 10/31/2000
cco007_S* 32-39-44-82-104-43-36 1061 1-3-1-4-3-4-1-2-6 7 USA 11/30/2000
cco008_S* 33-38-30-82-152-173-68 1102 1-1-2-5-2-1-2-1-2 8 USA 3/20/2001
cco009_C* 33-39-30-82-113-43-17 829 1-1-1-4-4-6-1-3-6 9 CC5 USA (AR) 2/21/2000
cco010_S* 33-322-30-173-104-35-68 3862 2-1-3-6-5-7-1-1-7 10 USA 2/29/2001
cco011_S* 53-39-30-82-118-35-36 1631 1-1-1-5-2-4-1-1-4 11 USA 2/20/2001
cco012_S* 33-38-30-78-104-35-17 1113 2-2-4-7-1-8-3-1-8 12 USA 11/28/2000
cco013_C* 33-39-30-82-113-47-17 825 2-1-5-8-1-3-1-2-9 13 CC7 USA (FL) 10/30/2000
cco014_C* 33-39-30-82-104-43-41 1017 2-4-1-9-1-3-1-2-6 14 CC3 USA (NC) 3/6/2000
cco015_C* 33-39-30-82-113-43-17 829 1-1-6-4-4-6-1-1-6 15 CC5 USA (AR) 8/21/2000
cco016_C* 33-39-30-82-113-47-17 825 2-1-5-8-1-3-1-2-9 13 CC7 USA (AL) 9/18/2000
cco017_C* 33-39-30-82-113-43-17 829 1-1-6-10-4-6-1-3-6 16 CC5 USA NA
cco018_B* 33-39-44-82-104-44-17 1436 3-1-7-11-2-1-1-4-10 17 CC10 USA (WA) 4/15/2002
cco019_B* 33-39-30-78-104-43-17 1068 2-2-4-4-1-9-3-2-8 18 CC1 USA (WA) 4/15/2002
cco020_B* 33-39-30-78-423-43-17 3863 2-2-4-4-1-9-3-2-8 19 CC1 USA (WA) 4/15/2002
cco023_B* 33-39-30-82-104-85-68 1104 1-1-1-4-2-3-2-1-11 20 CC2 USA (WA) 4/15/2002
cco024_B* 33-39-30-78-104-43-17 1068 2-2-4-4-1-9-3-2-8 18 CC1 USA (WA) 4/15/2002
cco025_B* 33-30-30-78-104-43-17 3864 2-2-4-4-1-9-3-2-8 21 CC1 USA (WA) 6/17/2002
cco027_B* 33-39-30-78-104-43-17 1068 4-2-4-4-1-9-3-2-8 22 CC1 USA (WA) 6/17/2002
cco037_B* 33-39-44-82-104-85-17 3865 5-1-7-11-2-1-1-4-10 23 CC10 USA (WA) 10/22/2002
cco049_B* 33-153-30-78-104-43-17 3866 2-2-4-4-1-10-3-2-8 24 CC1 USA (OR) 7/15/2003
cco051_B* 33-39-30-78-104-43-17 1068 2-2-4-4-1-9-3-2-8 18 CC1 USA (WA) 12/9/2003
cco052_B* 33-39-30-78-104-43-17 1068 2-2-4-4-1-9-3-2-8 18 CC1 USA (WA) 12/9/2003
cco054_B* 33-39-30-78-104-43-17 1068 2-2-4-4-1-9-3-2-8 18 CC1 USA (WA) 12/9/2003
cco055_B* 33-39-30-82-104-85-68 1104 1-1-1-12-2-9-2-1-10 25 CC2 USA (CA) 7/5/2002
cco060_B* 33-39-30-82-104-85-68 1104 5-1-1-12-2-9-2-4-4 26 CC2 USA (CA) 4/30/2003
cco061_B* 33-39-30-82-104-85-68 1104 1-1-1-11-2-11-2-5-2 27 USA (CA) 10/17/2003
cco062_B* 33-153-30-82-104-85-68 2698 5-1-1-12-2-1-2-4-10 28 CC2 USA (CA) 10/17/2003
cco063_B* 33-153-30-82-104-85-68 2698 5-1-1-12-2-9-2-4-4 29 CC2 USA (CA) 10/17/2003
cco065_B* 33-153-30-82-104-85-68 2698 5-1-1-12-2-9-2-4-4 29 CC2 USA (CA) 11/4/2003
cco067_B* 33-39-30-82-104-85-68 1104 1-1-1-3-2-3-2-1-4 30 CC2 USA (CA) 11/30/2003
cco069_H* 33-39-30-82-189-43-17 1585 1-1-8-8-1-3-1-1-6 31 Poland 2004
cco070_H* 33-176-30-115-104-43-17 2301 2-1-8-13-1-6-1-2-2 32 Poland 2004
cco071_H* 33-110-103-350-188-368-265 3867 1-5-9-14-6-6-4-6-12 33 Poland 2004
cco072_H 33-39-30-82-113-43-17 829 2-1-10-11-1-6-1-2-13 34 CC12 Poland 2004
cco073_H 33-39-30-82-113-47-17 825 1-1-11-15-1-12-1-1-2 35 CC8 Poland 2005
cco074_H* 33-39-30-82-189-47-17 1191 1-1-11-16-1-6-1-1-2 36 CC8 Poland 2005
cco075_H 33-39-30-78-104-43-17 1068 2-1-4-4-7-9-5-2-8 37 CC1 Canada 1990
cco076_H* 33-176-30-82-451-43-17 3868 2-1-10-11-1-3-1-2-6 38 CC12 Slovenia 2002
cco077_H* 33-39-30-79-104-35-17 855 1-1-4-15-1-13-6-1-14 39 CC6 Bosnia Herzegovina 2002
cco078_H 33-39-30-79-104-35-17 855 1-1-10-15-1-13-6-1-15 40 CC6 Slovenia 2002
cco079_H* 33-176-30-82-113-43-17 1586 2-1-10-17-1-3-1-7-16 41 CC12 Belgium 1998
cco080_T* 33-39-65-82-113-47-17 894 5-1-12-13-1-6-1-8-2 42 USA (CO) 1981
cco081_H* 33-39-261-79-104-64-17 3869 5-1-1-15-1-6-1-1-17 43 Sweden 1982
cco082_H* 33-39-30-82-113-35-17 899 1-2-13-11-1-14-1-2-18 44 CC4 Israel 1983
cco083_H* 33-39-30-82-113-47-41 889 2-6-14-18-8-6-1-1-6 45 Belgium 1984
cco085_H 33-38-30-79-104-35-17 2642 1-1-15-11-1-9-1-1-6 46 Sweden 2006
cco086_H* 33-38-30-115-113-43-17 892 2-1-16-11-1-6-1-1-16 47 Canada 1981
cco087_H* 33-39-30-79-452-43-17 3870 6-1-3-17-9-3-7-1-19 48 UK 1984
cco088_H* 32-38-30-82-152-35-17 900 1-2-1-11-2-9-2-1-20 49 Canada 1986
cco090_H* 32-42-30-82-104-43-17 898 1-1-3-8-1-15-2-2-9 50 USA 1985
cco091_H* 33-176-30-79-113-43-17 3020 5-1-10-11-1-3-1-1-2 51 Switzerland 1993
cco092_H* 33-39-30-328-104-43-17 3340 1-1-8-15-1-6-1-9-21 52 Switzerland 1993
cco093_H* 33-39-30-79-104-43-41 901 1-5-17-19-1-15-1-9-16 53 Switzerland 1993
cco094_H 33-39-30-82-113-47-17 825 1-2-13-11-1-14-1-2-18 54 CC4 Switzerland 1993
cco095_H 33-39-66-79-104-47-41 3348 1-2-18-20-1-16-4-1-22 55 Switzerland 1993
cco096_H 33-38-30-82-104-35-17 1096 7-1-1-21-2-3-1-1-2 56 Switzerland 6/28/1995
cco097_H 33-39-30-82-113-47-17 825 1-2-10-8-1-14-1-2-23 57 CC4 Switzerland 12/2/2002
cco098_C 33-38-30-82-104-43-17 854 1-1-7-11-1-1-8-1-4 58 CC11 Switzerland 2/4/2002
cco099_C 33-38-30-82-104-43-17 854 1-1-7-11-1-1-8-1-4 58 CC11 Switzerland 7/4/2002
cco100_C* 33-38-30-82-104-332-17 3336 1-1-7-22-1-1-8-1-6 59 CC11 Switzerland 6/25/2002
cco101_C 53-38-30-82-118-44-36 1147 1-1-19-5-2-2-1-1-10 60 Switzerland 10/4/2002
cco102_C* 53-38-30-82-118-44-36 1147 1-1-19-5-2-2-1-1-10 60 Switzerland 10/4/2002
cco103_T* 33-39-30-140-189-43-41 3871 2-6-1-23-10-3-9-2-24 61 USA 6/5/2003
cco104_T* 33-39-122-140-113-43-17 1050 1-7-1-10-4-17-1-1-6 62 USA 5/23/2002
cco105_T* 33-39-122-79-113-43-41 1167 1-1-6-24-4-3-1-1-6 63 USA 10/22/2002
cco106_T* 33-39-30-82-113-47-17 825 2-1-12-25-1-3-1-2-25 64 CC7 USA 4/7/2001
cco107_T* 33-39-30-140-104-43-41 1067 2-5-1-26-1-3-1-2-24 65 CC3 USA 4/3/2000
cco108_T* 33-39-30-82-104-43-41 1017 2-4-1-27-1-3-1-2-6 66 CC3 USA 8/13/2003
cco109_T 33-39-30-82-104-43-41 1017 2-4-1-27-1-3-1-2-6 66 CC3 USA 11/19/2003
cco110_T* 33-39-30-82-113-35-17 899 1-2-13-11-1-14-1-2-18 44 CC4 USA 5/23/2002
cco111_T* 33-39-103-82-104-324-41 3872 2-6-3-8-1-6-10-2-6 67 USA 6/6/2002
cco112_T 33-39-30-82-211-85-17 1082 1-1-20-8-1-6-11-1-23 68 USA 6/26/2002
cco113_T 33-39-30-82-104-43-41 1017 2-4-1-27-1-3-1-2-6 66 CC3 USA 7/24/2002
cco114_T* 241-39-262-82-113-56-17 3873 2-1-12-11-1-3-1-2-9 69 USA 5/17/2002
cco115_T 33-39-30-79-113-47-17 860 2-1-6-10-4-6-1-3-6 70 CC5 USA 5/29/2003
cco116_T 33-39-30-82-104-43-41 1017 2-4-1-27-1-18-1-2-6 71 CC3 USA 10/22/2003
cco117_T 33-39-30-82-113-43-17 829 1-1-12-4-11-6-1-1-6 72 CC5 USA 4/1/2003
RM2228_C 33-39-30-140-113-43-41 1063 2-4-1-28-1-3-1-2-6 73 CC3 USA 1998
a

NA, not available; CC, clonal complex with a group definition of 12/16.

b

Isolates marked with * were tested on the microarray. S, swine; C, chicken; T, turkey; B, bovine; and H, human.

c

Allelic profiles for the 7 pubMLST loci, representing aspA, glnA, gltA, glyA, pgm, tkt, and uncA, respectively.

d

Allelic profiles for the nine MLST loci new to this study, representing adk, aroE, mdh, nadP, pheS, pgi, recA, carB, and trmU, respectively.

e

Dates are given as month/day/year.