TABLE 1.
Genea | Encoded protein | Relative transcript level |
---|---|---|
Downregulated | ||
lmo0048 | Similar to Staphylococcus two-component sensor histidine kinase AgrB | 0.02 |
lmo0049 | Unknown | 0.02 |
lmo0050 | Similar to sensor histidine kinase (AgrC from Staphylococcus) | 0.02 |
lmo0051 | Similar to 2-component response regulator protein (AgrA from Staphylococcus) | 0.02 |
lmo0208 | Conserved hypothetical protein | 0.47 |
lmo0210 (ldh) | Similar to l-lactate dehydrogenase | 0.19 |
lmo0238 (cysE) | Similar to serine O-acetyltransferase | 0.31 |
lmo0239 (cysS) | Cysteinyl-tRNA synthetase | 0.33 |
lmo0240 | Highly similar to B. subtilis YazC protein | 0.35 |
lmo0241 | Similar to conserved hypothetical proteins like B. subtilis YacO protein | 0.34 |
lmo0242 | Similar to B. subtilis YacP protein | 0.40 |
lmo0243 (sigH) | RNA polymerase σ30 factor | 0.44 |
lmo0283 | Similar to ABC transporter permease protein | 0.34 |
lmo0284 | Similar to ABC transporter (ATP-binding protein) | 0.38 |
lmo0285 | Putative lipoprotein | 0.41 |
lmo0286 | Similar to aminotransferase | 0.34 |
lmo0302 | Unknown | 0.35 |
lmo0352 | Highly similar to regulatory proteins (DeoR family) | 0.44 |
lmo0477 | Putative secreted protein | 0.02 |
lmo0478 | Putative secreted protein | 0.02 |
lmo0479 | Putative secreted protein | 0.03 |
lmo0560d | Similar to NADP-specific glutamate dehydrogenase | 0.30 |
lmo0641 | Similar to heavy metal-transporting ATPase | 0.25 |
lmo0642 | Unknown | 0.25 |
lmo0778 | Unknown | 0.13 |
lmo0780 | Unknown | 0.44 |
lmo0788 | Unknown | 0.31 |
lmo0795 | Conserved hypothetical protein | 0.45 |
lmo1014 (gbuA)b | Highly similar to glycine betaine ABC transporter (ATP-binding protein) | 0.44 |
lmo1015 (gbuB)b | Highly similar to glycine betaine ABC transporters (permease) | 0.43 |
lmo1056 | Unknown | 0.52 |
lmo1073b | Similar to metal binding protein (ABC transporter) | 0.14 |
lmo1120 | Unknown | 0.53 |
lmo1121 | Unknown | 0.55 |
lmo1227 | Similar to uracil-DNA glycosylase | 0.42 |
lmo1298 (glnR)e | Similar to glutamine synthetase repressor | 0.15 |
lmo1299 (glnAe | Highly similar to glutamine synthetases | 0.21 |
lmo1516d | Similar to ammonium transporter NrgA | 0.10 |
lmo1517d | Similar to nitrogen regulatory PII protein | 0.16 |
lmo1634 | Similar to alcohol-acetaldehyde dehydrogenase | 0.11 |
lmo1983 (ilvD) | Similar to dihydroxy-acid dehydratase | 0.39 |
lmo1984 (ilvB)b | Similar to acetolactate synthase (acetohydroxy-acid synthase) (large subunit) | 0.49 |
lmo1985 (ilvN)b | Similar to acetolactate synthase (acetohydroxy-acid synthase) (small subunit) | 0.41 |
lmo2064 | Similar to large conductance mechanosensitive channel protein | 0.34 |
lmo2192d | Similar to oligopeptide ABC transporter (ATP-binding protein) | 0.40 |
lmo2193d | Similar to oligopeptide ABC transporter (ATP-binding protein) | 0.48 |
lmo2195d | Similar to oligopeptide ABC transporter (permease) | 0.45 |
lmo2360 | Transmembrane protein | 0.49 |
lmo2374 | Similar to aspartate kinase | 0.49 |
lmo2407 | Unknown | 0.53 |
lmo2410e | Unknown | 0.26 |
lmo2457 (tpi)d | Highly similar to triose phosphate isomerase | 0.42 |
lmo2458 (pgk)d | Highly similar to phosphoglycerate kinase | 0.38 |
lmo2459 (gap)d | Highly similar to glyceraldehyde 3-phosphate dehydrogenase | 0.34 |
lmo2460d | Similar to B. subtilis CggR hypothetical transcriptional regulator | 0.18 |
lmo2587 | Conserved hypothetical protein | 0.41 |
lmo2646 | Unknown | 0.02 |
lmo2648 | sImilar to phosphotriesterase | 0.02 |
lmo2753e | Unknown | 0.43 |
lmo2761 | Similar to β-glucosidase | 0.03 |
lmo2762 | Similar to PTS cellobiose-specific enzyme IIB | 0.10 |
lmo2763 | Similar to PTS cellobiose-specific enzyme IIC | 0.12 |
lmo2764 | Similar to xylose operon regulatory protein and to glucose kinase | 0.12 |
lmo2768 | Hypothetical membrane protein | 0.45 |
lmo2785 (kat)e | Catalase | 0.46 |
lmo2857 | Hypothetical protein | 0.32 |
Upregulated | ||
lmo0109b | Similar to transcriptional regulatory proteins, AraC family | 5.14 |
lmo0110c | Similar to lipase | 3.83 |
lmo0130d | Similar to 5-nucleotidase, putative peptidoglycan bound protein (LPXTG motif) | 14.16 |
lmo0135d | Similar to oligopeptide ABC transport system substrate-binding proteins | 3.40 |
lmo0211 (ctc) | Similar to B. subtilis general stress protein | 2.32 |
lmo0267 | Similar to other proteins | 1.85 |
lmo0391b | Unknown | 2.25 |
lmo0392b | Highly similar to B. subtilis YqfA protein | 2.09 |
lmo0422b | Similar to unknown protein | 1.95 |
lmo0514 | Similar to internalin protein, putative peptidoglycan bound protein (LPXTG motif) | 2.26 |
lmo0530 | Unknown | 2.30 |
lmo0556b | Similar to phosphoglycerate mutase | 2.31 |
lmo0715 | Unknown | 2.09 |
lmo0769 | Similar to α-1,6-mannanase | 3.81 |
lmo0863 | Unknown | 2.57 |
lmo0864 | Unknown | 3.56 |
lmo0865 | Similar to phosphomannomutase | 2.52 |
lmo0971 (dltD) | DltD protein for d-alanine esterification of lipoteichoic acid and wall teichoic acid | 2.22 |
lmo0972 (dltC) | d-Alanyl carrier protein | 1.94 |
lmo0973 (dltB) | DltB protein for d-alanine esterification of lipoteichoic acid and wall teichoic acid | 2.08 |
lmo0974 (dltA)c | d-Alanine-activating enzyme (Dae), d-alanine-d-alanyl carrier protein ligase (Dcl) | 2.11 |
lmo1042b | Similar to molybdopterin biosynthesis protein MoeA | 2.60 |
lmo1043 | Similar to molybdopterin-guanine dinucleotide biosynthesis MobB | 2.56 |
lmo1044b | Similar to molybdopterin converting factor, subunit 2 | 2.89 |
lmo1045b | Similar to molybdopterin converting factor, subunit 1 | 2.77 |
lmo1046b | Similar to molybdenum cofactor biosynthesis protein C | 3.07 |
lmo1047 | Similar to molybdenum cofactor biosynthesis protein A | 2.37 |
lmo1048b | Similar to molybdenum cofactor biosynthesis protein B | 1.95 |
lmo1049 | Similar to molybdopterin biosynthesis protein MoeB | 2.92 |
lmo1097 | Similar to integrases | 2.81 |
lmo1142 | Similar to Salmonella enterica PduS protein | 3.73 |
lmo1143 | Similar to S. enterica PduT protein | 3.56 |
lmo1144 | Similar to S. enterica PduU protein | 2.29 |
lmo1145 | Similar to S. enterica PduV protein | 2.37 |
lmo1146 | Unknown | 2.44 |
lmo1150 | Regulatory protein similar to S. enterica serovar Typhimurium PocR protein | 7.31 |
lmo1172b | Similar to two-component response regulator | 10.10 |
lmo1254d | Similar to α,α-phosphotrehalase | 7.38 |
lmo1255d | Similar to PTS system trehalose-specific enzyme IIBC | 9.42 |
lmo1306 | Highly similar to B. subtilis YneF protein | 2.52 |
lmo1339 | Similar to glucose kinase | 1.99 |
lmo1349b | Similar to glycine dehydrogenase (decarboxylating) subunit 1 | 4.21 |
lmo1388 (tcsA)d | CD4+ T-cell-stimulating antigen, lipoprotein | 2.41 |
lmo1396 | Similar to phosphatidylglycerophosphate synthase | 1.94 |
lmo1416 | Unknown | 2.83 |
lmo1425 (opuCD) | Similar to betaine/carnitine/choline ABC transporter | 1.90 |
lmo1521 | Similar to N-acetylmuramoyl-l-alanine amidase | 2.45 |
lmo1538b | Similar to glycerol kinase | 4.35 |
lmo1539b | Similar to glycerol uptake facilitator | 5.31 |
lmo1648 | Unknown | 2.65 |
lmo1690 | Similar to hypothetical proteins | 4.01 |
lmo1879 (cspD)b | Similar to cold shock protein | 11.39 |
lmo1883b | Similar to chitinases | 8.00 |
lmo1900 (panD) | Similar to aspartate 1-decarboxylases | 3.86 |
lmo1901 (panC) | Similar to panthotenate synthetases | 3.68 |
lmo1902 (panB) | Similar to ketopantoate hydroxymethyltransferases | 5.94 |
lmo1903 | Similar to thioredoxin | 2.47 |
lmo1954 (drm) | Similar to phosphopentomutase | 3.92 |
lmo1955b | Similar to integrase/recombinase | 3.04 |
lmo1970 | Similar to putative phosphotriesterase-related proteins | 2.78 |
lmo1972 | Similar to pentitol PTS system enzyme IIB component | 4.53 |
lmo1974 | Similar to transcription regulators (GntR family) | 2.87 |
lmo1999b | Weakly similar to glucosamine-fructose-6-phosphate aminotransferase | 2.14 |
lmo2007 | Weakly similar to putative sugar-binding lipoproteins | 2.10 |
lmo2084d | Unknown | 2.66 |
lmo2104 | Unknown | 2.42 |
lmo2257 | Hypothetical CDS | 16.96 |
lmo2293d | Protein gp10 (bacteriophage A118) | 6.05 |
lmo2295d | Protein gp8 (bacteriophage A118) | 7.76 |
lmo2296d | Similar to coat protein (bacteriophage SPP1) | 13.00 |
lmo2298d | Protein gp4 (bacteriophage A118) | 12.60 |
lmo2300 | Putative terminase large subunit (bacteriophage A118) | 6.06 |
lmo2304 | Protein gp65 (bacteriophage A118) | 3.61 |
lmo2305 | Unknown | 2.63 |
lmo2306 | Similar to phage protein | 3.61 |
lmo2307 | Hypothetical protein | 4.35 |
lmo2308 | Similar to single-stranded DNA-binding protein | 3.72 |
lmo2309 | Unknown | 2.58 |
lmo2310 | Unknown | 3.71 |
lmo2311 | Unknown | 3.97 |
lmo2312 | Unknown | 4.29 |
lmo2315 | Similar to protein gp51 (bacteriophage A118) | 2.92 |
lmo2322 | Protein gp44 (bacteriophage A118) | 3.20 |
lmo2335 (fruA) | Highly similar to PTS fructose-specific enzyme IIABC component | 54.79 |
lmo2336 (fruB) | Fructose-1-phosphate kinase | 98.99 |
lmo2337 | Similar to regulatory protein DeoR family | 112.00 |
lmo2343 | Similar to nitrilotriacetate monooxygenase | 2.74 |
lmo2344 | Similar to B. subtilis YtnI protein | 2.97 |
lmo2345 | Conserved hypothetical protein | 2.56 |
lmo2437d | Unknown | 10.25 |
lmo2522 | Similar to hypothetical cell wall binding protein from B. subtilis | 3.30 |
lmo2539 (glyA) | Highly similar to glycine hydroxymethyltransferase | 2.20 |
lmo2590b | Similar to ATP binding proteins | 4.55 |
lmo2684c | Similar to cellobiose phosphotransferase enzyme IIC component | 18.73 |
lmo2685c | Similar to cellobiose phosphotransferase enzyme IIA component | 17.18 |
lmo2708 | Similar to PTS system, cellobiose-specific enzyme IIC | 17.05 |
lmo2714 | Peptidoglycan-anchored protein (LPXTG motif) | 2.10 |
lmo2742d | Unknown | 6.51 |
lmo2743 | Similar to transaldolase | 6.06 |
lmo2771b | Similar to β-glucosidase | 135.36 |
lmo2772b | Similar to β-glucoside-specific enzyme IIABC | 207.92 |
lmo2773b | Similar to transcription antiterminator | 178.03 |
lmo2786 (bvrC) | Unknown | 2.93 |
lmo2787 (bvrB)b | β-Glucoside-specific phosphotransferase enzyme IIABC component | 10.06 |
lmo2788 (bvrA)b | Transcription antiterminator | 4.51 |
lmo2797b | Similar to phosphotransferase system mannitol-specific enzyme IIA | 5.61 |
lmo2798b | Similar to phosphatase | 6.56 |
lmo2851 | Similar to AraC-type regulatory protein | 4.98 |
Genes were identified by microarray analyses as down- or upregulated in EGD-e/pycA::pLSV101 relative to L. monocytogenes EGD-e grown in BHI medium.
Gene or operon whose transcription was shown previously to be controlled by CcpA and Hpr-SerP (16).
Gene or operon whose transcription was shown previously to be controlled by CcpA only (16).
Gene or operon whose transcription was shown previously to be controlled by Hpr-SerP only (16).