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. 2010 Jan 13;84(7):3595–3602. doi: 10.1128/JVI.02130-09

TABLE 1.

PCR primers/oligonucleotides used in this study

Primer or oligonucleotide Sequence (5′-3′) mer
Primers
    Helicase forward CATCCATATGGGCTGTCGGGTTACCCCCGG 30
    Helicase reverse CATCGGATCCTCAGAAAAAGTTATTAACGATTG 33
    SM GKS forward GGT GTG CCC GGG TCC GGC GCG TCC CGC TCT ATC ACC 36
    SM GKS reverse GGT GAT AGA GCG GGA CGC GCC GGA CCC GGG CAC ACC 36
    SM DE forward GGG CGC CGG GTT GTC ATT GCT GCG GCT CCA TCC CTC 36
    SM DE reverse GAG GGA TGG AGC CGC AGC AAT GAC AAC CCG GCG CCC
RNA oligonucleotides
    RNA1 UUU UUU UUU UUU CGC UGA UGU CGC CUG G 28
    RNA2 CCA GGC GAC AUC AGC G 16
    RNA3 CGC UGA UGU CGC CUG GUU UUU UUU UUU U 28
    RNA4 CCA GGC GAC AUC AGC GAA AAA AAA AAA A 28
    Poly(A) AAA AAA AAA AAA AAA AAA A 19
    Poly(G) GGG GGG GGG GGG GGG GGG G 19
    Poly(C) CCC CCC CCC CCC CCC CCC C 19
    Poly(U) UUU UUU UUU UUU UUU UUU U 19
DNA oligonucleotides
    DNA1 TTT TTT TTT TTT CGC TGA TGT CGC CTG G 28
    DNA2 CCA GGC GAC ATC AGC G 16
    DNA3 CGC TGA TGT CGC CTG GTT TTT TTT TTT T 28
    DNA4 CCA GGC GAC ATC AGC GAA AAA AAA AAA A 28
    Poly(A) AAA AAA AAA AAA AAA AAA A 19
    Poly(G) GGG GGG GGG GGG GGG GGG G 19
    Poly(C) CCC CCC CCC CCC CCC CCC C 19
    Poly(T) TTT TTT TTT TTT TTT TTT T 19