Table 1.
Sequences, relative binding affinities, and isoelectric points of peptides used in this study
| VSV-peptide analogs | Sequence | Relative binding affinity* | Isoelectric point (IP) |
|---|---|---|---|
| WtN52-59† | RGYVYQGL | Medium | 10.3 |
| K6 | RGYVYKGL | Medium | 10.7 |
| E6 | RGYVYEGL | Medium | 8.2 |
| PolyG | GGYGYGGL | Low | 8.4 |
| PolyI | IGYIYIGL | High | 8.2 |
Relative binding affinity was assessed in competitive folding experiments of Kb H chain and β2m together with a mixture of K6, E6, PolyG, and PolyI peptide against the Wt peptide (data not shown). The high relative binding affinity is approximately eight times higher than the medium; and the medium relative binding affinity is approximately 15 times higher than the low relative binding affinity.
The KD = 171 nmolar (0.17 μM) for the VSV Wt peptide at 37°C (35).