Table 1.
Matrix of pairwise identity percentages between the complete DNA-A nucleotide sequences of the twenty-three isolates of okra-infecting Cotton leaf curl Gezira virus (CLCuGV) isolates from Burkina Faso and representatives of some begomoviruses infecting okra in Africa.
| CLCuGV-NE [NE:Sad: NG1:07]* | CLCuGV- NE [NE:Sad: AF1:07]* | CLCuGV-NE [NE:Sad: NG2:07]* | CLCuGV-EG [EG:Cai: Ok]* | CLCuGV-SD [SD:Sha: Ok]* | CLCuGV- SD [SD:Gez: Si] | CLCuGV-SD [SD:Gez: Ok]* | CLCuGV-CM [CM:Lys: Ok:08]* | OYCrV-[ML:06]* | OYCrV-[CM:Njo: Ok:08]* | OYCrV-[ML:01: 05]* | HoLCrV-[EG:Cai:97] | HoLCrV-[EG:Giz] | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NE [BF:Tie:Ok1:08]* | 96.3 | 96.8 | 98.7 | 93.3 | 95 | 94.6 | 94.8 | 89.6 | 72.4 | 72.6 | 72.4 | 84.1 | 83.9 | |
| NE [BF:Tie:Ok2:08]* | 96.3 | 96.8 | 98.7 | 93.3 | 95 | 94.6 | 94.8 | 89.6 | 72.4 | 72.4 | 72.4 | 84.1 | 83.9 | |
| NE [BF:Kap:Ok1:08]* | 97.3 | 96.8 | 96.8 | 94.4 | 96.1 | 95.9 | 96.0 | 91.4 | 72.0 | 72.4 | 72.0 | 83.7 | 83.7 | |
| NE [BF:Kap:Ok2:08]* | 96.4 | 96.4 | 98.8 | 93.3 | 94.9 | 94.6 | 94.8 | 89.3 | 72.2 | 72.3 | 72.2 | 83.9 | 83.7 | |
| NE [BF:Kap:Ok3:08]* | 96.8 | 97.1 | 96.7 | 94.4 | 96.2 | 95.9 | 96.0 | 91.4 | 72.1 | 72.6 | 72.0 | 84.1 | 84.1 | |
| NE [BF:Kap:Ok4:08]* | 96.3 | 96.8 | 98.7 | 93.3 | 95.0 | 94.7 | 94.8 | 89.6 | 72.4 | 72.6 | 72.4 | 84 | 83.8 | |
| NE [BF:Kap:Ok5:08]* | 96.6 | 96.2 | 96.8 | 94.2 | 96.1 | 95.9 | 96.1 | 91.2 | 72 | 72.3 | 71.9 | 83.5 | 83.5 | |
| NE [BF:Kap:Ok6:08]* | 95.9 | 96.2 | 96.2 | 94.6 | 96.2 | 95.8 | 96.1 | 91.5 | 71.7 | 72.4 | 71.7 | 84.0 | 84.1 | |
| NE [BF:Kap:Ok7:08]* | 96.3 | 96.8 | 98.6 | 93.2 | 95 | 94.6 | 94.8 | 89.6 | 72.3 | 72.5 | 72.3 | 83.9 | 83.7 | |
| NE [BF:Kap:Ok8:08]* | 96.8 | 96.4 | 96.7 | 94.3 | 96.1 | 95.9 | 96.0 | 91.3 | 72.0 | 72.4 | 71.9 | 83.8 | 83.7 | |
| NE [BF:Kap:Ok9:08]* | 96.3 | 96.8 | 98.7 | 93.3 | 95.0 | 94.6 | 94.8 | 89.6 | 72.4 | 72.6 | 72.3 | 83.9 | 83.8 | |
| NE [BF:Kap:Ok10:08]* | 95.0 | 94.8 | 97.3 | 93.2 | 94.8 | 94.6 | 94.7 | 89.3 | 72.2 | 72.0 | 72.2 | 83.6 | 83.4 | |
| NE [BF:Pô:Ok1:08]* | 95.4 | 95.1 | 95.9 | 94.0 | 95.7 | 95.4 | 95.6 | 90.7 | 71.9 | 72.3 | 71.9 | 83.4 | 83.4 | |
| NE [BF:Pô:Ok2:08]* | 95.3 | 95.1 | 95.8 | 94.0 | 95.7 | 95.4 | 95.6 | 90.6 | 71.9 | 72.3 | 71.9 | 83.4 | 83.4 | |
| NE [BF:Pô:Ok3:08]* | 96.6 | 96.5 | 96.5 | 94.4 | 95.9 | 95.7 | 95.8 | 91.1 | 72 | 72.3 | 71.9 | 83.8 | 83.8 | |
| NE [BF:Pô:Ok4:08]* | 96.6 | 96.5 | 96.5 | 94.4 | 95.9 | 95.7 | 95.8 | 91.1 | 72 | 72.3 | 71.9 | 83.8 | 83.8 | |
| NE [BF:Pô:Ok5:08]* | 96.6 | 96.5 | 96.5 | 94.4 | 95.9 | 95.7 | 95.8 | 91.1 | 72 | 72.3 | 71.9 | 83.8 | 83.8 | |
| NE [BF:Pô:Ok6:08]* | 96.6 | 96.5 | 96.5 | 94.4 | 95.9 | 95.7 | 95.8 | 91.1 | 72 | 72.3 | 71.9 | 83.8 | 83.8 | |
| NE [BF:Pô:Ok7:08]* | 96.6 | 96.5 | 96.5 | 94.4 | 95.9 | 95.7 | 95.8 | 91.1 | 72 | 72.3 | 71.9 | 83.8 | 83.8 | |
| NE [BF:Kab:Ok1:08]* | 96.6 | 96.5 | 96.5 | 94.4 | 95.9 | 95.7 | 95.8 | 91.1 | 72 | 72.3 | 71.9 | 83.8 | 83.8 | |
| NE [BF:Kab:Ok2:08]* | 96.6 | 96.5 | 96.5 | 94.4 | 95.9 | 95.7 | 95.8 | 91.1 | 72 | 72.3 | 71.9 | 83.8 | 83.8 | |
| NE [BF:Baz:Ok:09]* | 96.4 | 96.7 | 98.8 | 93.4 | 95.1 | 94.7 | 95 | 89.6 | 72.4 | 72.4 | 72.4 | 83.9 | 83.7 | |
| NE [BF:Bam:Ok:09]* | 98.7 | 98.2 | 95.9 | 92.4 | 93.9 | 93.7 | 93.8 | 89.3 | 72.4 | 72.7 | 72.3 | 84.2 | 84.0 | |
*Begomovirus DNA-A isolated on Okra (Abelmoshus esculentus) from Burkina Faso
Acronyms: Niger: NE; Burkina Faso: BF; Tiébélé: Tie; Kampala: Kap; Kamboinsé: Kab; Bazéga: Baz; Bama: Bam
Percentages of identity over the 89% taxonomic threshold of begomovirus are presented in bold