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. Author manuscript; available in PMC: 2010 Mar 17.
Published in final edited form as: Int J Data Min Bioinform. 2010 Jan 14;4(1):21–43. doi: 10.1504/ijdmb.2010.030965

Table 1.

Classification for each of the 147 protein chains in the dataset. The four letter PDB ids are subscripted by the chain. As can be seen from the table, over half (55.7%) of the RNAs are rRNAs.

RNA Type PDBIDs
dsRNA 1DI2A; 1UV JA; 1Y Z9A
mRNA 1AV 6A; 1G2EA; 1GTFQ; 1KNZA
1KQ2A; 1M 8XA; 1WPUA; 1WSUA
2A1RA; 2ASBA
rRNA 1APGA; 1DFUP ; 1FEUA; 1FJGB
1FJGC; 1FJGD; 1FJGE; 1FJGG
1FJGI; 1FJGJ; 1FJGK; 1FJGL
1FJGM ; 1FJGN ; 1FJGP ; 1FJGQ
1FJGS; 1FJGT ; 1FJGV ; 1G1XA
1HROW ; 1I6UA; 1JBRA; 1MZPA
1SDSA; 1T 0KB; 1UN 6B; 1V QO1
1V QO2; 1V QO3; 1V QOA; 1V QOB
1V QOC; 1V QOD; 1V QOE; 1V QOG
1V QOH; 1V QOI; 1V QOJ; 1V QOK
1V QOL; 1V QOM ; 1V QON ; 1V QOP
1V QOQ; 1V QOR; 1V QOS; 1V QOT
1V QOU ; 1V QOV ; 1V QOW ; 1V QOX
1V QOY ; 1V QOZ; 1W 2B5; 1Y 698
1Y 69K; 1Y 69U ; 2AV YF ; 2AV YU
2AW40; 2AW 41; 2AW 42; 2AW 43
2AW4D; 2AW 4E; 2AW 4G; 2AW 4H
2AW4J; 2AW 4L; 2AW 4N ; 2AW 4P
2AW4Q; 2AW 4R; 2AW 4S; 2AW 4Y
2AW4Z; 2BH2A; 2D3O1; 2D3OS
1G1XB; 1G1XC
siRNA 1RPUA; 1SI3A; 2BGGA
snRNA 1A9NA; 1EC6A; 1LNGA; 1M 8VA
1OOAA
SRP RNA 1E8OA; 1HQ1A
tRNA 1ASYA; 1B23P ; 1C0AA; 1EIYB
1F7UA; 1FFYA; 1H3EA; 1H4SA
1J1UA; 1J2BA; 1K8WA; 1N 78A
1Q2SA; 1QF 6A; 1QTQA; 1R3EA
1SERA; 1TFWA; 1U 0BB; 1V FGA
1WZ2A; 2BTEA; 2CT 8A; 2FMTA
Viral RNA 1A34A; 1DDLA; 1H2CA; 1LAJA
1N35A; 1NB7A; 1PGL2; 1RMVA
1WNEA;2AZ0A; 2BU 1A
Other 1B2MA; 1JIDA; 1M 5OC; 1Y V PA
1ZH5A; 2A8VA; 2BX2L