Table II.
Rosetta Energy Constituents of “Real2” and “Decoys2”
Rosetta energy term | Physical meaning | μreal2 | μdecoys2 | Δreal2-decoys2 | p-value |
---|---|---|---|---|---|
fa_atr | Lennard-Jones attractive | −285.29 | −283.05 | −2.24 | 2.96E-04 |
fa_rep | Lennard-Jones repulsive | 27.01 | 25.76 | 1.24 | <2.20E-16 |
fa_sol | solvation energy | 126.78 | 124.80 | 1.98 | 1.28E-06 |
fa_intra_rep | Intraresidue LJ repulsive | 0.70 | 0.75 | −0.04 | <2.20E-16 |
pro_close | Proline ring closure | 0.05 | 0.02 | 0.02 | <2.20E-16 |
fa_pair | Statistical pair energy | −10.27 | −9.86 | −0.41 | 2.88E-03 |
hbond_sr_bb | Backbone-backbone hbonds close in primary sequence | −15.27 | −15.26 | −0.01 | 0.94 |
hbond_lr_bb | Backbone-backbone hbonds distant in primary sequence | −27.09 | −28.05 | 0.96 | 6.15E-03 |
hbond_bb_sc | Side chain-backbone hydrogen bond energy | −7.88 | −5.49 | −2.39 | <2.20E-16 |
hbond_sc | Side chain-side chain hydrogen bond energy | −7.52 | −7.60 | 0.08 | 0.54 |
Rama | Ramachandran energy | −7.50 | −6.09 | −1.41 | <2.20E-16 |
Omega | Omega dihedral energy | 4.80 | 5.79 | −0.99 | <2.20E-16 |
fa_dun | Internal energy of sidechain rotamers | 38.03 | 39.37 | −1.33 | 3.97E-12 |
p_aa_pp | Amino acid Phi-Psi statistical energy | −10.24 | −9.11 | −1.13 | <2.20E-16 |
ref | Amino acid reference energy | −14.59 | −12.77 | −1.81 | 1.65E-14 |
Total | Sum of all terms | −188.29 | −180.80 | −7.49 | <2.20E-16 |
For the energy constituents of “real,” “decoys,” and “random,” see Supporting Information Table S1.