TABLE 1.

Genes affected by contact normalization of Src transformed cells

Symbol	Probe sets	Fold change		Gene name
		Srca	CNb
Genes increased by Src and decreased during contact normalization
1700012B09Rikc	1428984_a_at	115	−3.4	RIKEN cDNA 1700012B09 gene
Pdpnc	1419309_at	93	−4.7	Podoplanin
Tmem163c	1428077_at	58	−5.5	Transmembrane protein 163
Smoc2	1415935_at	47	−6.6	SPARC-related modular calcium binding 2
Pstpip2	1421410_a_at	41	−4.5	Proline-serine-threonine phosphatase-interacting protein 2
Mal	1417275_at	30	−5.6	Myelin and lymphocyte protein
Lepr	1425644_at	28	−4.7	Leptin receptor
Elavl2	1421883_at	26	−9.9	Embryonic lethal abnormal vision-like 2
Igsf11	1460607_at	26	−5.0	Immunoglobulin superfamily, member 11
Mafb	1451715_at	14	−6.7	v-Maf protein B
LOC677224c	1435703_at	13	−3.5	Similar to RIKEN cDNA 2810457I06
4930408O21Rikc	1431741_a_at	8.8	−4.8	RIKEN cDNA 4930408O21 gene
Elmod1	1457223_at	8.3	−5.0	ELMO domain-containing 1
Atp13a4	1438707_at	7.8	−4.7	ATPase type 13A4
Kdr	1449379_at	6.6	−3.7	Kinase insert domain protein receptor
C9	1422815_at	5.4	−4.9	Complement component 9
Genes decreased by Src and increased during contact normalization
Fgf7	1438405_at	−130	46	Fibroblast growth factor 7
D10Bwg1379e	1435050_at	−95	13	DNA segment Chr 10 Brigham and Women's Genetics 1379 expressed
Sox11	1431225_at	−93	16	SRY box-containing gene 11
Ccl20	1422029_at	−91	12	Chemokine (C-C motif) ligand 20
Vcam1d	1448162_at	−78	22	Vascular cell adhesion molecule 1
	1415989_at	−56	16
	1451314_a_at	−55	12
Sema3e	1427673_a_at	−71	8.3	Semaphorin 3E
Sdprd	1416779_at	−47	13	Serum deprivation response
	1416778_at	−39	11
Epha4	1429021_at	−44	8.3	Eph receptor A4
Ntn1	1454974_at	−42	17	Netrin 1
Cabc1	1417066_at	−32	5.0	Chaperone, ABC1 activity of bc1 complex like (Schizosaccharomyces pombe)
Spry1	1415874_at	−26	4.5	Sprouty homolog 1 (Drosophila)
Loxl1	1451978_at	−25	9.9	Lysyl oxidase-like 1
1810008K04Rikc	1441254_at	−19	9.0	RIKEN cDNA 1810008K04 gene
Pdgfrb	1436970_a_at	−18	3.9	Platelet-derived growth factor receptor β polypeptide
D4Bwg0951ec	1428384_at	−17	4.2	DNA segment Chr 4 Brigham and Women's Genetics 0951 expressed
Fhl1c,d	1417872_at	−16	11	Four and a half LIM domains 1
Gpr126	1437408_at	−16	5.7	G protein-coupled receptor 126
	1437409_s_at	−13	5.7
Egfr	1435888_at	−16	5.2	Epidermal growth factor receptor
Itih2	1417618_at	−12	7.3	Inter-α-trypsin inhibitor heavy chain 2
Epb4.1l3	1419062_at	−12	5.6	Erythrocyte protein band 4.1-like 3
Il1rl1	1425145_at	−9.7	8.3	Interleukin 1 receptor-like 1
Wnt5a	1448818_at	−9.1	4.6	Wingless-related MMTV integration site 5A
Tmem56	1434553_at	−8.2	4.4	Transmembrane protein 56

^a Expression in Src-transformed cells divided by expression in nontransformed cells.

^b Expression in transformed cells divided by expression in transformed cells undergoing contact normalization.

^c Effects confirmed by RT-PCR (see Fig. 1).

^d Genes previously shown to be induced by contact normalization.