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. 2010 Mar 23;8(3):e1000343. doi: 10.1371/journal.pbio.1000343

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This is an open-access article distributed under the terms of the Creative Commons Public Domain declaration which stipulates that, once placed in the public domain, this work may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose.

This is an open-access article distributed under the terms of the Creative Commons Public Domain declaration, which stipulates that, once placed in the public domain, this work may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose.

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We identified a total of 26 divergence-driving words (7 bp) for BCD (1), HB (12), KR (10), and GT (3). A red box in a (row, column) entry indicates that the corresponding word (row) was identified as a DDW for a particular factor (column); similarly, a solid circle in a (row, column) indicates that a word (row) matches the DNA-binding specificity of a factor analyzed here (column), and an empty circle in a (row, column) indicates that a word (row) identified as a DDW for a particular factor (column) matches the specificity of an A-P transcription factor (plus Zelda), other than the six analyzed here, as characterized by [29]. Sequence motifs and their reverse complements are shown in the row labels.