Table 2. Differential expression of RD2 genes in response to AF.
| Gene | ML | P | LL | S | Putative function | note | ||
| M28_Spy1304 | 10.19 | 6.76 | 16.10 | + | Hypothetical Protein | |||
| M28_Spy1305 | 2.39 | + | 2.43 | + | 1.75 | + | Hypothetical membrane protein | |
| M28_Spy1306 | 10.06 | + | 7.60 | + | 2.47 | Cell surface protein | Virulence | |
| M28_Spy1307 | 5.13 | 3.98 | + | 1.08 | Hypothetical exported protein | Virulence | ||
| M28_Spy1308 | 5.52 | 2.65 | 3.81 | + | Hypothetical exported protein | Virulence | ||
| M28_Spy1309 | 1.54 | + | 1.71 | + | 1.70 | + | Hypothetical protein | |
| M28_Spy1310 | 3.41 | 3.13 | + | 1.78 | Membrane protein | |||
| M28_Spy1311 | Not detected | |||||||
| M28_Spy1312 | Not detected | |||||||
| M28_Spy1313 | 8.70 | 6.23 | 2.28 | Hypothetical membrane protein | ||||
| M28_Spy1314 | 5.17 | 4.37 | + | 3.00 | hypothetical protein | |||
| M28_Spy1315 | 5.69 | 7.31 | + | 3.42 | Hypothetical protein | |||
| M28_Spy1316 | 9.67 | 8.45 | 6.03 | Hypothetical protein | ||||
| M28_Spy1317 | 35.90 | 12.95 | 3.67 | Hypothetical protein | ||||
| M28_Spy1318 | 3.81 | 2.69 | 6.31 | + | Hypothetical protein | |||
| M28_Spy1319 | Not detected | |||||||
| M28_Spy1320 | 11.20 | 36.55 | + | 10.89 | + | Hypothetical cytosolic protein | ||
| M28_Spy1321 | Not detected | |||||||
| M28_Spy1322 | 6.26 | 4.41 | 2.37 | FtsK SpoIIIE family | ||||
| M28_Spy1323 | 9.05 | + | 6.88 | + | 1.61 | Hypothetical cytosolic protein | ||
| M28_Spy1324 | 5.80 | 7.41 | + | 2.68 | Hypothetical cytosolic protein | |||
| M28_Spy1325 | 3.99 | + | 2.28 | 1.72 | Cell surface protein | Virulence | ||
| M28_Spy1326 | 2.18 | + | 1.08 | −1.29 | + | M like protein | Virulence | |
| M28_Spy1327 | 18.65 | 6.43 | 4.84 | Hypothetical cytosolic protein | ||||
| M28_Spy1328 | Not detected | |||||||
| M28_Spy1329 | 12.91 | 5.16 | 2.98 | Transcriptional Cro CI regulator | ||||
| M28_Spy1330 | 1.80 | + | 1.75 | + | 2.23 | + | Transcriptional Cro CI regulator | |
| M28_Spy1331 | 2.22 | + | 2.51 | + | 4.28 | + | Hypothetical cytosolic protein | |
| M28_Spy1332 | 2.42 | + | 2.50 | + | 8.66 | + | Hypothetical exported protein | Virulence |
| M28_Spy1333 | 1.89 | + | 1.69 | + | 5.46 | + | Hypothetical cytosolic protein | |
| M28_Spy1334 | 1.74 | + | 2.35 | + | 6.34 | + | DNA-damage-inducible protein J | |
| M28_Spy1335 | 1.20 | 1.36 | 3.20 | Transposase | ||||
| M28_Spy1336 | −53.13 | + | −90.92 | + | −133.85 | + | R28 Cell surface protein | Virulence |
| M28_Spy1337 | −5.18 | + | −8.50 | + | −7.93 | + | Transcriptional regulator | |
Values represent fold change in expression in AF at ML, LL, and S growth phases compared to expression in THY medium. +: P<0.05.