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. 2010 Mar 7;10:43. doi: 10.1186/1471-2229-10-43

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Copyright ©2010 Chen et al; licensee BioMed Central Ltd.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Gene expression-profilings of the DnaJ mutants with comparison to WT. Genes whose expression showed more than a two-fold change (up- or down-regulated) with the p-value less than 0.05 and the B-value more than 2.0 were selected for making the heatmaps using the R program and Bioconductor packages. The values are averages from three independent biological replicates starting from the growth of a new set of plants. The heatmap marked by WT shows the changes of gene expression in WT after 6 h illumination at 1000 μmol photons m^-2s^-1against 6 h illumination at 120 μmol photons m^-2s^-1. The heatmaps marked by the names of the DnaJ mutant show the changes of gene expression in each mutant against WT under both GL and HL conditions after 6 h illumination. WT, wild-type; GL, 120 μmol photons m^-2s^-1growth light; HL, 1000 μmol photons m^-2s^-1high light. (red, upregulated; green, downregulated; black, missing value).