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Distributions for (a) VH gene recombination site choice, (b) n nucleotides in the VD junction, (c) 5′ DH recombination site choice, (d) 3′ DH recombination site choice, (e) n nucleotides in the DJ junction, (f) 5′ JH recombination site choice. All the data is fit to negative binomial distributions with varying parameters derived from Jackson et al. (2004). These parameters are used for transition probabilities in the HMM.
