Table 3.

Results from 662 sequences from Genbank, showing the performance of the five programs

	Number of rearrangements
All programs agree	113
All programs disagree	140
SoDA2 agrees with two or more programs	300
VQuest agrees with two or more programs	255
iHMMune-align agrees with two or more programs	137
JOINSOLVER agrees with two or more programs	272
SoDA agrees with two or more programs	244
SoDA2 agrees only with SoDA (no other programs agree)	11

If two or more programs displayed the same rearrangement (including the alleles), it was believed to be the majority rearrangement.