Table 2.
Genomic organization of exons encoding rat NAVR/AVR
Exon Number | |||||||
---|---|---|---|---|---|---|---|
NAVR | AVR | Intron 3′ Seq | Exon Termini | Intron 5′ Seq | Exon Size, bp | Intron Size, bp | Functional Domain in Exon |
1 | From 1st (*), 2nd (**), 3rd (***) initiator seq (Fig. 1) |
85*/490**/589*** | NAVR +1 | ||||
From +1 | |||||||
1 | gtgagt | 29b | 535 | Initiating M | |||
From aa1 | ~GCTCCAG | ||||||
2 | cccag | CTCGGAG ~CTGCAGA |
gtaagc | 272 | 238 | ||
3 | tccag | GGCTCGG ~GTGTCGG |
gtaagt | 36 | 210 | ||
4 | tacag | AGTACAA ~TGAAGGG |
gtgagt | 1,753 | 746 | AVP bd/Gs | |
1 | AGACTTa ~TGAAGGG |
gtgagt | 1,088 | 746 | AVR +1 initiating M AVP bd/Gs |
||
5 | 2 | tccag | TTCTCAA ~TTCTGAC |
gtgagt | 93 | 1,027 | |
6 | 3 | cacag | CTTGTCA ~CACTCAG |
gtaagg | 171 | 75 | |
7 | 4 | cacag | GATACAG ~CCCTCAG |
gtaaag | 168 | 422 | ANG II bd |
8 | 5 | tgcag | TCTGACT ~GGTGGGC |
834 | Poly(A) | ||
mRNA size, bp | |||||||
3,412* | 2,354 | ||||||
3,902** | |||||||
4,001*** |
Seq, nucleotide sequence;
AVR transcription RNA initiation site determined by rapid amplification of 5′ cDNA ends (5′-RACE);
NAVR exon 1 size determined from initiation-methionine consensus sequence; M, methionine; bd, binding domain; Gs, Gs activator domain.