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. 2010 Mar;3(2):390–405. doi: 10.1093/mp/ssq012

Table 4.

Transcriptional Response in coi-16 Mutants Compared to wt1: K Re-Supply.

AGI Name Description Statistics2
 Average fold change3
a l p wt coi
LOSS OF REGULATION
At4g27410 RD26 Putative protein 1.8 0.6 0.0 0.6 1.0
At3g28650 CHP-rich zinc finger protein 2.4 0.7 0.3 0.6 1.0
At4g37740 GRF2 Putative protein 4.8 0.7 0.3 0.5 1.0
At2g04840 Hypothetical protein 0.1 0.8 0.4 0.5 1.0
At4g22250 Hypothetical protein 8.8 0.5 0.7 0.6 1.1
At5g15080 Serine/threonine protein kinase 12.0 0.8 0.7 0.5 0.9
At5g59220 PP2C Protein phosphatase 2C 13.1 0.7 0.0 0.5 0.9
At2g46600 Putative caltractin 14.2 0.9 0.2 0.4 0.8
At4g03920 Putative protein 2.8 0.6 0.6 0.6 1.0
At3g44860 Methyltransferase-related 2.3 1.0 0.3 0.3 1.1
At4g08870 ARGAH2 Putative arginase 7.2 0.9 0.2 0.4 0.9
At4g37870 PEPCK Phosphoenolpyruvate carboxykinase 8.0 0.7 0.9 0.5 0.9
At1g26570 UGD1 UDP-glucose dehydrogenase 8.7 0.7 0.4 0.5 0.9
At2g11810 MGD3 Monogalactosyldiacylglycerol synth 8.9 0.9 0.0 0.4 0.9
At3g44870 Methyltransferase-related 13.5 0.8 0.1 0.4 1.2
At2g22330 CYP79B3 Putative cytochrome P450 14.2 0.6 0.0 0.5 0.9
At1g54020 Myrosinase-associated protein 1.9 1.1 0.0 0.3 1.0
At1g52040 MBP1 Myrosinase-binding protein 5.4 0.9 0.1 0.5 1.1
At5g38540 Myrosinase binding protein-like 9.8 0.8 0.2 0.5 0.9
At3g21380 Unknown protein 11.9 0.5 0.3 0.6 0.9
At5g61820 Putative protein 12.5 0.5 0.6 0.6 0.9
At5g24770 VSP2 Vegetative storage protein 2 3.2 0.9 0.2 0.4 1.0
At1g64160 Disease resistance response protein 5.8 0.6 0.3 0.6 1.0
At1g72260 Thi2.1 Thionin 6.0 0.7 0.2 0.5 0.9
At2g43530 Putative trypsin inhibitor 9.6 0.5 0.3 0.6 0.9
At1g20440 Hypothetical protein 14.0 0.9 0.6 0.4 0.8
At3g25020 Disease resistance protein family 14.5 0.7 0.2 0.5 0.9
At5g57625 Putative pathogenesis-related protein 1.2 0.6 0.7 0.6 1.0
At2g29460 GSTU4 Glutathione transferase, putative 2.9 0.6 0.0 0.5 1.0
At1g79720 Putative aspartyl protease 6.8 0.6 0.3 0.6 1.1
At2g33380 RD20 RD20 protein 8.7 0.6 0.0 0.5 0.9
At1g11580 PME Pectin methylesterase, putative 1.2 0.8 0.0 0.5 1.0
At1g24070 CSLA10 Glucosyltransferase, putative 11.5 0.8 0.0 0.5 0.9
At2g43570 Glycosyl hydrolase family 19 12.1 0.5 0.9 0.6 0.9
At2g17500 Expressed protein 3.1 0.6 0.0 0.6 1.0
At5g17860 CAX7 Putative sodium–calcium exchanger 14.3 0.5 0.4 0.6 0.9
At1g70350 Hypothetical protein 1.1 0.5 0.7 0.6 1.0
At1g17620 Expressed protein 1.4 0.5 0.4 0.6 1.0
At5g66650 Putative protein 1.7 0.5 0.9 0.6 1.0
At1g74800 Hypothetical protein 2.6 0.7 0.2 0.5 1.0
At3g53630 Putative protein 2.8 0.5 0.3 0.6 1.0
At4g18610 Putative protein 8.4 1.0 0.3 0.3 0.9
At1g17380 Expressed protein 8.7 0.9 0.4 0.4 0.9
At1g70700 Hypothetical protein 12.7 0.7 0.3 0.6 1.2
At1g06140 Hypothetical protein 14.4 0.5 0.6 0.6 1.1
At2g17650 Acyl-CoA synthetase like protein 3.1 0.8 0.2 2.2 1.0
At2g23130 AGP17 Arabinogalactan-protein (AgP17) 11.0 0.6 0.1 1.8 1.1
At4g23820 Polygalacturonase, putative 11.3 0.5 0.7 1.6 1.1
At2g26520 Expressed protein 14.7 1.0 0.1 2.7 1.3
GAIN OF REGULATION
At1g26680 B3-TF Hypothetical protein 2.4 1.1 0.3 1.1 0.3
At4g09760 Choline kinase gmCK2p-like protein 6.9 0.5 0.3 0.9 0.6
At3g61830 ARF18 Auxin response factor-like protein 12.1 0.6 0.1 0.9 0.5
At1g49500 Expressed protein 9.5 0.6 0.8 1.1 1.8
SAME REGULATION
At1g63840 Putative RINg zinc finger protein 1.2 0.5 0.2 0.7 0.7
At1g67970 HSFA8 Heat shock transcription factor 6.1 0.5 0.2 0.7 0.7
At2g17040 NAM-TF NAM (no apical meristem)-like 8.6 0.5 0.6 0.6 0.7
At5g58350 WNK4 MAP kinase 0.2 0.5 0.9 0.7 0.7
At2g41100 TCH3 Calmodulin-like protein 1.0 0.8 0.9 0.6 0.6
At1g08450 CRT3 Calreticulin, putative 4.6 0.6 0.8 0.7 0.7
At1g65800 ARK2 Receptor kinase, putative 7.2 0.6 0.3 0.7 0.7
At2g31880 Leucine-rich repeat protein kinase 12.4 0.7 0.4 0.6 0.7
At1g09070 SRC2 Expressed protein 14.7 1.0 0.8 0.4 0.6
At5g48660 Putative protein 9.6 0.5 0.6 0.7 0.8
At5g37600 GSR1 Glutamine synthetase 0.5 0.6 0.7 0.7 0.7
At4g34230 CAD5 Cinnamyl alcohol dehydrogenase 0.9 0.5 0.9 0.7 0.7
At3g14990 4-methyl-5(β-hydroxyethyl)-thiazole 3.4 0.6 0.1 0.7 0.7
At3g22890 APS1 ATP sulfurylase, putative 3.7 0.6 1.0 0.7 0.7
At5g64000 SAL2 3(2),5-bisphosphate nucleotidase 4.7 0.7 0.7 0.6 0.6
At4g05020 NDB2 A. thaliana cDNA W43435 6.4 0.8 0.6 0.6 0.6
At2g29370 Putative tropinone reductase 11.8 0.5 0.1 0.7 0.6
At5g19550 ASP2 Aspartate aminotransferase 2 12.6 0.5 0.8 0.8 0.7
At4g34710 ADC2 Arginine decarboxylase SPE2 9.9 1.7 0.2 0.3 0.4
At1g69930 GSTU11 Glutathione transferase, putative 4.3 0.5 0.9 0.7 0.7
At5g06320 NHL3 Harpin-induced protein-like 5.0 0.9 0.9 0.5 0.6
At1g11910 Putative aspartic proteinase 9.0 0.7 0.2 0.6 0.7
At1g01470 LEA14 Hypothetical protein 9.2 1.1 0.4 0.4 0.5
At3g25010 Disease resistance protein family 12.2 0.8 0.1 0.5 0.6
At3g10980 SAG20 Unknown protein 14.0 0.6 0.7 0.6 0.7
At3g52400 SYP122 Syntaxin SYP122 5.3 0.8 0.3 0.6 0.6
At1g19370 Expressed protein 7.1 0.6 0.4 0.6 0.7
At2g22500 Mitochondrial carrier protein family 8.5 0.6 0.4 0.6 0.7
At5g52760 Expressed protein; protein 9.9 0.5 0.6 0.7 0.6
At1g61800 GPT2 Gluc-6-P/P-translocator precursor 10.8 0.9 0.8 0.5 0.6
At5g39520 Expressed protein 10.9 0.6 0.6 0.7 0.7
At1g48610 Regulatory protein HAL3B 2.9 0.7 0.9 1.5 1.6
At3g60320 bZIP protein 11.1 0.6 0.5 1.4 1.7
At4g17980 NAM-TF NAM (no apical meristem)-like 11.5 0.5 0.7 1.3 1.6
At5g14260 Putative protein 2.1 0.5 0.8 1.4 1.5
At2g31680 RABA5D GTP-binding protein, putative 2.2 0.8 0.6 1.8 1.8
At4g03110 RNA-binding CELF protein, putative 5.3 0.6 0.1 1.4 1.6
At2g31010 Putative protein kinase 5.5 0.7 0.4 1.5 1.6
At5g24240 Ubiquitin 8.3 1.1 0.3 2.4 1.9
At4g00060 Hypothetical protein 10.9 0.6 0.8 1.4 1.6
At1g64940 CYP89A6 Cytochrome p450, putative 11.6 0.7 0.6 1.9 1.5
At5g23970 Acyltransferase family 12.8 0.7 0.8 1.8 1.5
At1g63290 D-ribulose-5-phosphate-3-epimerase 0.3 0.8 0.3 1.7 1.7
At4g25050 ACP4 Acyl carrier-like protein 6.2 0.8 0.9 1.6 1.8
At1g72610 GLP1 Germin-like protein 8.5 0.8 0.5 1.6 1.9
At5g65730 Xyloglucan endo-transglycosylase 13.3 0.6 0.8 1.6 1.4
At4g33970 Extensin-like protein; protein 13.9 0.7 0.4 1.7 1.4
At1g73840 Hydroxyproline-rich glycoprot 14.8 0.6 0.8 1.3 1.6
At3g26520 TIP1.2 Gamma tonoplast intrinsic prot 0.6 0.6 0.4 1.6 1.6
At3g16240 TIP2.1 Delta tonoplast integral protein 3.3 0.9 0.6 1.9 1.8
At1g49510 Unknown protein 0.0 0.5 0.1 1.4 1.4
At3g13720 PRA1 Expressed protein 0.5 0.5 0.5 1.4 1.5
At4g20260 Endomembrane-associated protein 1.1 0.6 0.4 1.6 1.6
At3g28460 Unknown protein 1.1 0.7 0.4 1.6 1.7
At3g07470 Expressed protein 1.3 0.7 0.1 1.7 1.7
At5g57320 Villin 4.0 0.7 0.4 1.7 1.5
At1g61740 Unknown protein 4.4 0.7 0.9 1.6 1.7
At5g18050 Auxin-induced protein-like 5.2 0.7 0.2 1.6 1.7
At3g52130 5B protein like protein 5.6 0.6 0.7 1.6 1.5
At5g14920 Putative protein 5.8 0.5 0.4 1.4 1.5
At3g13500 Hypothetical protein 5.8 0.6 0.3 1.4 1.6
At1g69040 ACR4 ACT Domain Repeat Protein 5.9 0.7 0.3 1.5 1.6
At2g46740 Hypothetical protein 6.8 0.9 0.8 1.8 2.1
At3g25930 Expressed protein 7.2 0.6 0.4 1.4 1.6
At4g24170 Putative protein 8.4 0.6 0.2 1.6 1.4
At3g63390 Putative protein 9.0 0.7 0.8 1.9 1.5
At5g64160 Expressed protein 10.5 0.5 0.3 1.4 1.5
At4g16830 Nuclear antigen homolog 11.0 0.7 0.4 1.5 1.8
At1g35617 Hypothetical protein 11.3 0.7 0.3 1.5 1.8
At1g68960 Hypothetical protein 11.7 0.6 0.3 1.4 1.8
At1g62510 Similar to 14Kd proline-rich 11.9 0.5 0.4 1.6 1.4
At1g75750 GASA1 Expressed protein 12.6 2.1 0.7 5.2 2.5
At5g52570 Putative beta-carotene hydroxylase 13.0 0.5 0.6 1.3 1.5
At5g13470 Putative protein 13.2 0.6 0.5 1.8 1.4
At2g45180 Expressed protein 13.6 1.1 0.8 2.7 1.8
At3g49900 Putative protein 14.9 0.6 0.4 1.4 1.6
1

Regulatory classes determined with vector analysis (Breitling et al., 2005).

2

Statistical parameters: angle (a), average vector length (l), consistency p-value in % (p).

3

From three replicate experiments.