Table (1).
# | Mutation name |
Ref | Mechanism | Suppressors | Ref |
---|---|---|---|---|---|
1 | pri10, cer7 | [7,14] [14] |
Inactivates P2 PolA essential in rnhA strains [16] |
her (RNAseH- deficient) |
[14] |
2 | cer17 | [14] |
Her (RNAseH- deficient) |
[14] | |
3 | svir 11 | [44] | |||
4 | pri7 | [15] | Favors β, γ conformation |
spr71 , spr77 , spr76 (stem of loop 3, restore stem IV formation) |
|
5 | pri1 | [7] | Preventing R-loop formation PolA essential in rnhA strains [16] |
||
6 | pri2 | [7] | |||
7 | pri3 | [7] | |||
8 | pri4 | [7] |
spr42 spr41 (enhance Pri3) |
[7] | |
9 | pri6 | [7] | Preventing primer extension. Insensitive to RNAseH and polA inactivation[16] |
spr61 Also addition of excess Pol I |
|
10 | cer6 | [80,14] | Conformational change that breaks a hairpin structure; makes the primer hypersensitive to RNAseH |
rev16 her (RNAseH- deficient) herB (increased DNA polymerase I activity) |
[14 , 80 , 81] |
11 | pri9 | [82] | Preventing R-loop formation (destabilizes hairpin) |
||
12 | cer8 | [82] | |||
13 | cer114 | [82] | Defective in RNAseH-dependent and independent modes; Conformational change |
rev20 herC |
[82] |
14 | pri5 | [7] | RNAseH cleavage sites shifter 5 nt upstream Prevents primer extension Insensitive to RNAseH and polA inactivation[16] |
Mutations with a negative effect on plasmid copy number, their names, phenotype and probable mechanism of action are listed. The number in column 1 identifies the mutation presented in Fig. (1). Pri= Priming-defective. Cer=ColE1 Replication defective; host factor suppressors are called her, for Host factor affecting colE1 Replication. svir=suppressor of virulence.