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. Author manuscript; available in PMC: 2010 Mar 26.
Published in final edited form as: Recent Pat DNA Gene Seq. 2010 Jan;4(1):58–73. doi: 10.2174/187221510790410822

Table (1).

Representative loss-of-function mutants of ColE1 family plasmids and corresponding suppressors.

# Mutation
name
Ref Mechanism Suppressors Ref
1 pri10, cer7 [7,14]
[14]
Inactivates P2
PolA essential in rnhA strains [16]
her (RNAseH-
deficient)
[14]
2 cer17 [14] Her (RNAseH-
deficient)
[14]
3 svir 11 [44]
4 pri7 [15] Favors β, γ conformation spr71 , spr77 ,
spr76
(stem of loop 3,
restore stem IV
formation)
5 pri1 [7] Preventing R-loop formation
PolA essential in rnhA strains
[16]
6 pri2 [7]
7 pri3 [7]
8 pri4 [7] spr42
spr41
(enhance Pri3)
[7]
9 pri6 [7] Preventing primer extension.
Insensitive to RNAseH and polA
inactivation[16]
spr61
Also addition of
excess Pol I
10 cer6 [80,14] Conformational change that
breaks a hairpin structure; makes
the primer hypersensitive to
RNAseH
rev16
her (RNAseH-
deficient)
herB (increased
DNA polymerase I
activity)
[14 , 80 ,
81]
11 pri9 [82] Preventing R-loop formation
(destabilizes hairpin)
12 cer8 [82]
13 cer114 [82] Defective in RNAseH-dependent
and independent modes;
Conformational change
rev20
herC
[82]
14 pri5 [7] RNAseH cleavage sites shifter 5
nt upstream
Prevents primer extension
Insensitive to RNAseH and polA
inactivation[16]

Mutations with a negative effect on plasmid copy number, their names, phenotype and probable mechanism of action are listed. The number in column 1 identifies the mutation presented in Fig. (1). Pri= Priming-defective. Cer=ColE1 Replication defective; host factor suppressors are called her, for Host factor affecting colE1 Replication. svir=suppressor of virulence.