Table 1.
Isolates studied in this paper.
| Species | Accession number1 | Host | Locality | GenBank2 |
||||
|---|---|---|---|---|---|---|---|---|
| SSU | LSU | ITS | EF1-α | β-tubulin | ||||
| Barriopsis fusca | CBS 174.26 | Citrus sp. | Cuba | EU673182 | DQ377857 | EU673330 | EU673296 | EU673109 |
| Bimuria novaezelandiae | CBS 107.79 | soil | New Zealand | AY016338 | AY016356 | – | – | – |
| Botryosphaeria corticis | CBS119047 | Vaccinium corymbosum | USA | EU673175 | EU673244 | DQ299245 | EU017539 | EU673107 |
| ATCC 22927 | Vaccinium sp. | USA | EU673176 | EU673245 | DQ299247 | EU673291 | EU673108 | |
| Botryosphaeria dothidea | CBS 115476 | Prunus sp. | Switzerland | EU673173 | AY928047 | AY236949 | AY236898 | AY236927 |
| CBS 110302 | Vitis vinifera | Portugal | EU673174 | EU673243 | AY259092 | AY573218 | EU673106 | |
| ‘Botryosphaeria’ tsugae | CBS 418.64 | Tsuga heterophylla | Canada | EU673208 | DQ377867 | DQ458888 | DQ458873 | DQ458855 |
| Byssothecium circinans | CBS 675.92 | Medicago sativa | USA | AY016339 | AY016357 | – | – | – |
| Capnodium coffeae | CBS 147.52 | Coffea robusta | Zaire | DQ247808 | DQ247800 | – | – | – |
| Cochliobolus heterostrophus | AFTOL 54 | Zea mays | Unknown | AY544727 | AY544645 | – | – | – |
| Davidiella tassiana | AFTOL 1591 | man, skin, foot | Netherlands | DQ678022 | DQ678074 | – | – | – |
| Delitschia winteri | AFTOL 1599 | dung of rabbit | Netherlands | DQ678026 | DQ678077 | – | – | – |
| Didymella cucurbitacearum | IMI 373225 | Unknown | USA | AY293779 | AY293792 | – | – | – |
| Diplodia acerina | CBS 910.73 | Acer pseudoplatanus | Germany | EU673160 | EU673234 | EU673315 | EU673282 | EU673139 |
| Diplodia corticola | CBS 112549 | Quercus suber | Portugal | EU673206 | AY928051 | AY259100 | AY573227 | DQ458853 |
| CBS 112546 | Quercus ilex | Spain | EU673207 | EU673262 | AY259090 | EU673310 | EU673117 | |
| Diplodia coryli | CBS 242.51 | Unknown | Italy | EU673162 | EU673235 | EU673317 | EU673284 | EU673105 |
| Diplodia cupressi | CBS 168.87 | Cupressus sempervirens | Israel | EU673209 | EU673263 | DQ458893 | DQ458878 | DQ458861 |
| CBS 261.85 | Cupressus sempervirens | Israel | EU673210 | EU673264 | DQ458894 | DQ458879 | DQ458862 | |
| Diplodia juglandis | CBS 188.87 | Juglans regia | France | EU673161 | DQ377891 | EU673316 | EU673283 | EU673119 |
| Diplodia mutila | CBS 112553 | Vitis vinifera | Portugal | EU673213 | AY928049 | AY259093 | AY573219 | DQ458850 |
| CBS 230.30 | Phoenix dactylifera | USA | EU673214 | EU673265 | DQ458886 | DQ458869 | DQ458849 | |
| Diplodia pinea A | CBS 393.84 | Pinus nigra | Netherlands | EU673219 | DQ377893 | DQ458895 | DQ458880 | DQ458863 |
| CBS 109727 | Pinus radiata | South Africa | EU673220 | EU673269 | DQ458897 | DQ458882 | DQ458865 | |
| Diplodia pinea C | CBS 109725 | Pinus patula | South Africa | EU673222 | EU673270 | DQ458896 | DQ458881 | DQ458864 |
| CBS 109943 | Pinus patula | Indonesia | EU673221 | EU673271 | DQ458898 | DQ458883 | DQ458866 | |
| Diplodia rosulata | CBS 116470 | Prunus africana | Ethiopia | EU673211 | DQ377896 | EU430265 | EU430267 | EU673132 |
| CBS 116472 | Prunus africana | Ethiopia | EU673212 | DQ377897 | EU430266 | EU430268 | EU673131 | |
| Diplodia scrobiculata | CBS 113423 | Pinus greggii | Mexico | EU673217 | EU673267 | DQ458900 | DQ458885 | DQ458868 |
| CBS 109944 | Pinus greggii | Mexico | EU673218 | EU673268 | DQ458899 | DQ458884 | DQ458867 | |
| Diplodia seriata | CBS 112555 | Vitis vinifera | Portugal | EU673215 | AY928050 | AY259094 | AY573220 | DQ458856 |
| CBS 119049 | Vitis sp. | Italy | EU673216 | EU673266 | DQ458889 | DQ458874 | DQ458857 | |
| Dothidea sambuci | AFTOL 274 | Unknown | Unknown | AY544722 | AY544681 | – | – | – |
| Dothidotthia sp. | CPC 12928 | Fendlera rupicola | USA | EU673225 | EU673272 | – | – | – |
| Dothidotthia sp. | CPC 12930 | Euonymus alatus | USA | EU673226 | EU673274 | – | – | – |
| Dothidotthia sp. | CPC 12932 | Acer negundis | USA | EU673227 | EU673275 | – | – | – |
| Dothidotthia sp. | CPC 12933 | Acer negundis | USA | EU673228 | EU673276 | – | – | – |
| Dothidotthia symphoricarpi | CPC 12929 | Symphoricarpos rotundifolia | USA | EU673224 | EU673273 | – | – | – |
| Dothiora cannabinae | AFTOL 1359 | Daphne cannabina | India | DQ479933 | DQ470984 | – | – | – |
| Dothiorella iberica | CBS 115041 | Quercus ilex | Spain | EU673155 | AY928053 | AY573202 | AY573222 | EU673096 |
| CBS 113188 | Quercus suber | Spain | EU673156 | EU673230 | AY573198 | EU673278 | EU673097 | |
| Dothiorella sarmentorum | IMI 63581b | Ulmus sp. | United Kingdom | EU673158 | AY928052 | AY573212 | AY573235 | EU673102 |
| CBS 115038 | Malus pumila | Netherlands | EU673159 | DQ377860 | AY573206 | AY573223 | EU673101 | |
| Dothiorella sp. | CAA 005 | Pistacia vera | USA | EU673157 | EU673231 | EU673312 | EU673279 | EU673098 |
| Dothiorella sp. | CAP 187 | Prunus dulcis | Portugal | EU673163 | EU673232 | EU673313 | EU673280 | EU673100 |
| Dothiorella sp. | JL 599 | Corylus avellana | Spain | EU673164 | EU673233 | EU673314 | EU673281 | EU673099 |
| Elsinoë veneta | AFTOL 1360 | Rubus sp. | Unknown | DQ678007 | DQ678060 | – | – | – |
| Guignardia bidwelli | CBS 111645 | Parthenocissus quinquefolia | USA | EU673223 | DQ377876 | – | – | – |
| Hysteropatella clavispora | AFTOL 1305 | Salix sp. | USA | DQ678006 | AY541493 | – | – | – |
| Lasiodiplodia crassispora | CBS 110492 | Unknown | Unknown | EU673189 | EU673251 | EF622086 | EF622066 | EU673134 |
| CBS 118741 | Santalum album | Australia | EU673190 | DQ377901 | DQ103550 | EU673303 | EU673133 | |
| Lasiodiplodia gonubiensis | CBS 115812 | Syzygium cordatum | South Africa | EU673193 | DQ377902 | DQ458892 | DQ458877 | DQ458860 |
| CBS 116355 | Syzygium cordatum | South Africa | EU673194 | EU673252 | AY639594 | DQ103567 | EU673126 | |
| Lasiodiplodia parva | CBS 356.59 | Theobroma cacao | Sri Lanka | EU673200 | EU673257 | EF622082 | EF622062 | EU673113 |
| CBS 494.78 | Cassava-field soil | Colombia | EU673201 | EU673258 | EF622084 | EF622064 | EU673114 | |
| Lasiodiplodia pseudotheobromae | CBS 447.62 | Citrus aurantium | Suriname | EU673198 | EU673255 | EF622081 | EF622060 | EU673112 |
| CBS 116459 | Gmelina arborea | Costa Rica | EU673199 | EU673256 | EF622077 | EF622057 | EU673111 | |
| Lasiodiplodia rubropurpurea | CBS 118740 | Eucalyptus grandis | Queensland | EU673191 | DQ377903 | DQ103553 | EU673304 | EU673136 |
| Lasiodiplodia theobromae | CBS 124.13 | Unknown | USA | EU673195 | AY928054 | DQ458890 | DQ458875 | DQ458858 |
| CBS 164.96 | Fruit along coral reef coast | New Guinea | EU673196 | EU673253 | AY640255 | AY640258 | EU673110 | |
| CAA 006 | Vitis vinifera | USA | EU673197 | EU673254 | DQ458891 | DQ458876 | DQ458859 | |
| Lasiodiplodia venezuelensis | CBS 118739 | Acacia mangium | Venezuela | EU673192 | DQ377904 | DQ103547 | EU673305 | EU673129 |
| Lepidosphaeria nicotiae | CBS 559.71 | sandy desert soil | Algeria | DQ384068 | DQ384106 | – | – | – |
| Leptosphaeria maculans | AFTOL 277 | Unknown | Unknown | DQ470993 | DQ470946 | – | – | – |
| Lewia eureka | AFTOL 267 | Medicago rugosa | Australia | DQ677994 | DQ678044 | – | – | – |
| Lophiostoma crenatum | AFTOL 1581 | Prunus spinosa | Switzerland | DQ678017 | DQ678069 | – | – | – |
| Massaria platani | AFTOL 1574 | Platanus occidentalis | USA | DQ678013 | DQ678065 | – | – | – |
| Massarina arundinacea | CBS 619.86 | Phragmites australis | Switzerland | DQ813513 | DQ813509 | – | – | – |
| Montagnula opulenta | AFTOL 1734 | Opuntia sp. | Unknown | AF164370 | DQ678086 | – | – | – |
| Mycosphaerella punctiformis | AFTOL 942 | Quercus robur | Netherlands | DQ471017 | DQ470968 | – | – | – |
| Myriangium duriaei | CBS 260.36 | Chrysomphalus aonidium | Argentina | AY016347 | AY016365 | – | – | – |
| Neodeightonia phoenicum | CBS 169.34 | Phoenix dactylifera | USA | EU673203 | EU673259 | EU673338 | EU673307 | EU673138 |
| CBS 123168 | Phoenix canariensis | Spain | EU673204 | EU673260 | EU673339 | EU673308 | EU673115 | |
| CBS 122528 | Phoenix dactylifera | Spain | EU673205 | EU673261 | EU673340 | EU673309 | EU673116 | |
| Neodeightonia subglobosa | CBS 448.91 | keratomycosis in eye | United Kingdom | EU673202 | DQ377866 | EU673337 | EU673306 | EU673137 |
| Neofusicoccum luteum | CBS 110299 | Vitis vinifera | Portugal | EU673148 | AY928043 | AY259091 | AY573217 | DQ458848 |
| CBS 110497 | Vitis vinifera | Portugal | EU673149 | EU673229 | EU673311 | EU673277 | EU673092 | |
| Neofusicoccum mangiferum | CBS 118531 | Mangifera indica | Australia | EU673153 | DQ377920 | AY615185 | DQ093221 | AY615172 |
| CBS 118532 | Mangifera indica | Australia | EU673154 | DQ377921 | AY615186 | DQ093220 | AY615173 | |
| Neofusicoccum parvum | CMW 9081 | Pinus nigra | New Zealand | EU673151 | AY928045 | AY236943 | AY236888 | AY236917 |
| CBS 110301 | Vitis vinifera | Portugal | EU673150 | AY928046 | AY259098 | AY573221 | EU673095 | |
| Neofusicoccum ribis | CBS115475 | Ribes sp. | USA | EU673152 | AY928044 | – | – | – |
| Phaeobotryon mamane | CPC 12264 | Sophora chrysophylla | Hawaii | EU673183 | DQ377898 | EU673331 | EU673297 | EU673125 |
| CPC 12440 | Sophora chrysophylla | Hawaii | EU673184 | EU673248 | EU673332 | EU673298 | EU673121 | |
| CPC 12442 | Sophora chrysophylla | Hawaii | EU673185 | DQ377899 | EU673333 | EU673299 | EU673124 | |
| CPC 12443 | Sophora chrysophylla | Hawaii | EU673186 | EU673249 | EU673334 | EU673300 | EU673120 | |
| CPC 12444 | Sophora chrysophylla | Hawaii | EU673187 | DQ377900 | EU673335 | EU673301 | EU673123 | |
| CPC 12445 | Sophora chrysophylla | Hawaii | EU673188 | EU673250 | EU673336 | EU673302 | EU673122 | |
| Phaeobotryosphaeria citrigena | ICMP 16812 | Citrus sinensis | New Zealand | EU673180 | EU673246 | EU673328 | EU673294 | EU673140 |
| ICMP 16818 | Citrus sinensis | New Zealand | EU673181 | EU673247 | EU673329 | EU673295 | EU673141 | |
| Phaeobotryosphaeria porosa | CBS 110496 | Vitis vinifera | South Africa | EU673179 | DQ377894 | AY343379 | AY343340 | EU673130 |
| Phaeobotryosphaeria visci | CBS 100163 | Viscum album | Luxembourg | EU673177 | DQ377870 | EU673324 | EU673292 | EU673127 |
| CBS 186.97 | Viscum album | Germany | EU673178 | DQ377868 | EU673325 | EU673293 | EU673128 | |
| CBS 122526 | Viscum album | Ukraine | – | – | EU673326 | – | – | |
| CBS 122527 | Viscum album | Ukraine | – | – | EU673327 | – | – | |
| Phaeosphaeria avenaria | AFTOL 280 | Unknown | Unknown | AY544725 | AY544684 | – | – | – |
| Phoma herbarum | AFTOL 1575 | Unknown | Unknown | DQ678014 | DQ678066 | – | – | – |
| Piedraia hortae | CBS 480.64 | man, hair | Brazil | AY016349 | AY016366 | – | – | – |
| Pleomassaria siparia | AFTOL 1600 | Betula verrucosa | Netherlands | DQ678027 | DQ678078 | – | – | – |
| Preussia terricola | AFTOL 282 | Unknown | Unknown | AY544726 | AY544686 | – | – | – |
| Pseudofusicoccum stromaticum | CBS 117448 | Eucalyptus hybrid | Venezuela | EU673146 | DQ377931 | AY693974 | AY693975 | EU673094 |
| CBS 117449 | Eucalyptus hybrid | Venezuela | EU673147 | DQ377932 | DQ436935 | DQ436936 | EU673093 | |
| Sordaria fimicola | – | Unknown | Unknown | AY545724 | AY545728 | – | – | – |
| Spencermartinsia vitícola | CBS 117009 | Vitis vinifera | Spain | EU673165 | DQ377873 | AY905554 | AY905559 | EU673104 |
| CBS 117006 | Vitis vinifera | Spain | EU673166 | EU673236 | AY905555 | AY905562 | EU673103 | |
| Spencermartinsia sp. (as Diplodia medicaginis) | CBS 500.72 | Medicago sativa | South Africa | EU673167 | EU673237 | EU673318 | EU673285 | EU673118 |
| Spencermartinsia sp. (as Diplodia spegazziniana) | CBS 302.75 | Poniciana gilliesii | France | EU673168 | EU673238 | EU673319 | EU673286 | EU673135 |
| Spencermartinsia sp. | ICMP 16827 | Citrus sinensis | New Zealand | EU673171 | EU673241 | EU673322 | EU673289 | EU673144 |
| Spencermartinsia sp. | ICMP 16828 | Citrus sinensis | New Zealand | EU673172 | EU673242 | EU673323 | EU673290 | EU673145 |
| Spencermartinsia sp. | ICMP 16819 | Citrus sinensis | New Zealand | EU673169 | EU673239 | EU673320 | EU673287 | EU673142 |
| Spencermartinsia sp. | ICMP 16824 | Citrus sinensis | New Zealand | EU673170 | EU673240 | EU673321 | EU673288 | EU673143 |
| Xylaria hypoxylon | AFTOL 51 | downed rotting wood | USA | AY544692 | AY544648 | – | – | – |
1 Acronyms of culture collections: AFTOL – Assembling the Fungal Tree of Life; CAA – A. Alves, Universidade de Aveiro, Portugal; CAP – Alan J.L. Phillips, Universidade Nova de Lisboa, Portugal; CBS – Centraalbureau voor Schimmelcultures, Utrecht, The Netherlands; CMW – M.J. Wingfield, FABI, University of Pretoria, South Africa; IMI – CABI Bioscience, Egham, U.K.; JL – J. Luque, IRTA, Spain.
2 Sequence numbers in italics were retrieved from GenBank. All others were obtained in the present study.