Table 3.

QTLs for grain shape detected in the RIL population derived from the cross between Nanyangzhan and Chuan7

			2006			2007
Traits	QTL	Interval	LOD	Aa	Vb %	LOD	Aa	Vb %
GL	qGL3a	RM6080-RM156	46.2	1.20	65.8	53.4	1.30	72.2
(mm)	qGL3b	RM3513-RM347				4.4	-0.30	4.1
	qGL3c	RM422-RM227	2.3c	0.22	2.4	5.7	0.30	4.9
	qGL7	RM22065-RM5720	4.7	0.30	5.1	5.4	0.30	4.7
GW	qGW2a	RM53-RM555	3.8	0.05	4.1
(mm)	qGW2b	RM13489-RM599				6.0	0.10	15.6
	qGW2c	RM599-RM318	4.7	0.08	9.3
	qGW2d	RM530-RM112	4.3	0.06	5.9
	qGW3	RM6080-RM156	6.2	-0.08	8.9	3.4	-0.07	7.0
	qGW5a	RM13-RM574	21.0	0.17	38.1	14.0	0.17	36.3
	qGW5b	RM5642-RM3295	5.8	0.09	11.3
	qGW5c	RM538-RM178	5.8	0.08	7.8	2.3c	0.06	5.3
	qGW9a	RM410-RM242	5.9	0.07	7.5	3.6	0.07	5.6
	qGW9b	RM160-RM215	6.6	0.08	9.2	5.1	0.08	8.4
GT	qGT3a	RM175-RM517	3.0	0.06	12.5	2.1c	0.04	7.4
(mm)	qGT3b	RM6080-RM156				3.3	0.04	7.3
	qGT3c	RM422-RM227				3.1	0.03	6.1
	qGT5	RM13-RM574	3.7	0.05	9.1	8.9	0.06	19.1
	qGT9a	RM434-RM410				3.1	0.03	5.3
	qGT9b	RM410-RM242	4.3	0.05	9.4
	qGT9c	RM160-RM215	8.9	0.07	17.1	2.6c	0.03	5.2
	qGT10a	RM3229-RM6704	3.4	0.04	6.1
	qGT10b	RM6704-RM171				4.4	0.04	10.4
LWR	qLWR2	RM262-RM475				3.8	-0.14	3.7
	qLWR3a	RM175-RM517	4.2	0.19	6.0	3.4	0.22	8.9
	qLWR3b	RM6080-RM156	48.0	0.50	57.0	51.3	0.53	64.2
	qLWR5	RM13-RM574	13.4	-0.25	13.5	5.5	-0.16	5.3
	qLWR7	RM1132-RM22065	3.2	0.13	3.5

^aA, additive effect, positive additive effect means Nanyangzhan allele increasing trait values.

^bV, variance explained by the QTL.

^cQTL with LOD ≥ 2.8 in one year but 2.0 ≤ LOD ≤ 2.8 in the other year are also listed.