Table 5.
Classification of bovine TRDV1 cDNA sequences
| cDNA clone name | Accession number1 | Provisional IMGT nomenclature2 | Closest germline gene found in this study3 | Number of nucleotide differences4 | TRDV set |
|---|---|---|---|---|---|
| Vdelta1.36 | EF175175 | NN | TRDV1l | 5 | 1 |
| BVd1.26 | U73393 | TRDV1S11 | TRDV1m | 6 | 1 |
| SB-C11 | FJ907530 | NN | TRDV1af | 1 | 1 |
| SB-C17 | - | NN | TRDV1af | 1 | 1 |
| BTDV27 | D16114 | TRDV1S14 | TRDV1af | 4 | 1 |
| BVd1.13 | U73380 | TRDV1S15 | TRDV1a | 2 | 1 |
| BTDV2 | D13656 | TRDV1S18 | TRDV1a | 2 | 1 |
| SB-B1 | FJ907521 | NN | TRDV1a | 5 | 1 |
| SB-C25 | FJ907532 | NN | TRDV1a | 5 | 1 |
| SB-C3 | - | NN | TRDV1a | 4 | 1 |
| BTDV4 | D13660 | TRDV1S13 | TRDV1h | 1 | 1 |
| SB-A5 | FJ907519 | NN | TRDV1h | 6 | 1 |
| SB-C1 | FJ907526 | NN | TRDV1h | 1 | 1 |
| SB-C15 | - | NN | TRDV1h | 1 | 1 |
| SB-A11 | FJ907520 | NN | TRDV1h | 2 | 1 |
| SB-C23 | - | NN | TRDV1h | 1 | 1 |
| SB-B7 | FJ907524 | NN | TRDV1b | 5 | 1 |
| BVd1.23 | U73390 | TRDV1S4 | TRDV1b | 0 | 1 |
| SB-C7 | FJ907528 | NN | ND | NA | 1 |
| BTDV1 | D16116 | TRDV1S6 | ND | NA | 1 |
| BTDV1 | D13655 | TRDV1S15 | ND | NA | 1 |
| BVd1.14 | U73381 | TRDV1S7 | ND | NA | 1 |
| SB-B6 | FJ907523 | NN | ND | NA | 1 |
| BTDV8 | D16112 | TRDV1S12 | ND | NA | 1 |
| SB-A7 | - | NN | ND | NA | 1 |
| SB-B11 | FJ907525 | NN | ND | NA | 1 |
| BTDV33 | D13658 | TRDV1S1 | ND | NA | 1 |
| SB-C19 | - | NN | ND | NA | 1 |
| BTDV3 | D13657 | TRDV1S16 | ND | NA | 1 |
| SB-B3 | FJ907522 | NN | ND | NA | 1 |
| BTDV28 | D16115 | TRDV1S17 | ND | NA | 1 |
| BVd1.24 | U73391 | TRDV1S2 | ND | NA | 1 |
| SB-C9 | FJ907529 | NN | TRDV1an | 2 | 2 |
| BVd1.16 | U73383 | TRDV1S9 | TRDV1an | 1 | 2 |
| BVd1.18 | U73385 | TRDV1S10 | TRDV1an | 5 | 2 |
| BVd1.15 | U73382 | TRDV1S3 | TRDV1am | 0 | 2 |
| SB-C5 | FJ907527 | NN | TRDV1az5 | 4 | 2 |
| SB-C13 | - | NN | TRDV1az5 | 4 | 2 |
| SB-A3 | - | NN | TRDV1az | 1 | 2 |
| BVd1.17 | U73384 | TRDV1S8 | TRDV1az | 1 | 2 |
| SB-A9 | - | NN | TRDV1az | 2 | 2 |
| SB-B9 | - | NN | TRDV1az5 | 4 | 2 |
| BVd1.21 | U73388 | TRDV1S23 | TRDV1ax | 1 | 3 |
| BVd1.20 | U73387 | TRDV1S22 | TRDV1aa | 2 | 3 |
| BTDV6 | D13661 | TRDV1S24 | TRDV1r | 1 | 3 |
| Vdelta1.37 | EF175176 | NN | TRDV1aq | 46 | 4 |
| Vdelta1.33 | EF175171 | NN | ND | NA | 5 |
| BTDV26 | D16113 | TRDV1S25 | ND | NA | 5 |
| BVd1.22 | U73389 | TRDV1S21 | ND | NA | 5 |
| BVd1.25 | U73392 | TRDV1S5 | ND | NA | 7 |
| Vdelta1.34 | EF175172 | NN | ND | NA | 7 |
| BVd1.19 | U73386 | TRDV1S20 | TRDV1ad | 1 | 8 |
| Vdelta1.35 | EF175173 | NN | TRDV1ae | 0 | 9 |
| SB-C21 | FJ907531 | NN | TRDV1u | 5 | 10 |
| BTDV36 | D13659 | TRDV1S19 | ND | NA | 11 |
1A dash indicates redundant sequence for which a GenBank accession number was not obtained.
2NN indicates sequence for which no Provisional Nomenclature exists.
3ND indicates cDNA sequences for which no corresponding gene could be identified in this study.
4Number of nucleotides that are different between the Provisional IMGT Nomenclature and the corresponding gene sequences between amino acid positions 1 and 104 (2nd-CYS); NA indicates sequence that lacks corresponding gene.
5Genes listed as corresponding are the closest matches; however, classification of these genes was unclear.
6cDNA sequence used for comparison was partial.