Table 1.
Percentage of genes in each of the ten functional categories in five PVSets
| Category Name | Gene Examples | PVSet1 | PVSet2 | PVSet4 | PVSet6 | PVSet11 |
|---|---|---|---|---|---|---|
| Cell Growth & Maintenance | Tubulin, auxin-regulated, histone | 26.3% | 40.0% | 39.3% | 29.8% | 25.4% |
| Energy | Chlorophyll binding, RuBisCO | 3.0% | 1.7% | 1.8% | 27.7% | 6.5% |
| Hypothetical/Unknown Function | Hypothetical/unknown function in databases | 24.1% | 35.0% | 25.0% | 17.4% | 32.5% |
| Other (Miscellaneous) | Transposons, cell death, pollen-related | 1.5% | 1.7% | 1.8% | 1.1% | 0.6% |
| Oxidative | Metallothionein, cysteine protease, peroxidase | 0.8% | 2.5% | 3.6% | 0.7% | 0.6% |
| Stress, Defense, Shock-related | Chitinase, drought resistance, stress-induced | 4.5% | 5.8% | 8.9% | 2.5% | 8.9% |
| Signaling | Cytochrome P450, protein kinases, calmodulin | 9.0% | 5.8% | 8.9% | 10.3% | 5.3% |
| Seed Proteins | Lipoxygenase, seed maturation protein, trypsin inhibitor | 16.5% | 0.0% | 0.0% | 5.0% | 0.0% |
| Transcription | DNA-binding, transcription factors, zinc finger proteins | 13.5% | 5.8% | 3.6% | 3.9% | 13.0% |
| Transporters and Membrane Proteins | Sugar/amino acid transporters, membrane intrinsic proteins | 0.8% | 1.7% | 7.1% | 1.8% | 7.1% |
The ten functional categories are shown along with examples of gene families placed in each category. The percentage of genes in each functional category is shown in each of five PVSets.