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. 2009 Dec 29;38(6):2099–2110. doi: 10.1093/nar/gkp1151

Table 1.

Statistics on data collection, phasing and refinement

A. Data collection
Data set Binary complex Ternary complex Se-Met (peak)
X-ray source PF NW12A PLS BL-4A PLS BL-4A
Wavelength (Å) 1.00000 1.23990 0.97954
Space group P321 P321 P321
    a, b, c (Å) 136.3, 136.3, 79.92 136.3, 136.3, 79.83 136.3, 136.3, 83.28
    α, β, γ (°) 90, 90, 120 90, 90, 120 90, 90, 120
Resolution range (Å) 50–2.50 (2.59–2.50)a 50–1.77 (1.80–1.77)a 50–2.73 (2.80–2.73)a
Total/unique reflections 489 231/29 916 1 660 636/82 927 731 176/23 991
Completeness (%) 100.0 (100.0)a 99.8 (96.5)a 100.0 (100.0)a
I/σI 39.5 (8.5)a 80.7 (8.3)a 45.5 (7.7)a
Rmerge b (%) 12.5 (41.7)a 6.1 (41.9)a 16.5 (65.5)a
B. Phasing
Figure of merit for 20.0–3.10 Å range (before/after density modification) 0.30/0.72
C. Model refinement
Resolution range (Å) 20.0–2.50 20.0–1.77 20.0–2.73
Rwork/Rfree c (%) 18.1/23.1 18.0/20.5 19.0/24.7
Number of atoms/average B-factor (Å2)
    Protein nonhydrogen atoms 4556/27.7 4563/22.5 4603/36.7
    Water oxygen atoms 324/28.0 791/37.1 199/36.8
    Ligand nonhydrogen atoms
        Fe(III) ion 1/43.4 1/17.5 1/45.8
        2-Oxoglutarate 10/21.8
        Sulfate 20/51.5 20/46.4
        Glycerol 6/58.8 6/44.0
R.M.S. deviations from ideal geometry
    Bond lengths (Å)/angles (°) 0.008/1.21 0.007/1.07 0.010/1.25
Ramachandran plot
    Most favorable (%) 89.5 90.3 89.3
    Allowed (%) 9.9 9.7 10.5
    Generously allowed (%) 0.6 0.0 0.2
    Disallowed (%) 0.0 0.0 0.0

aValues in parentheses refer to the highest resolution shell.

bRmerge = ∑hi | I(h)i – <I(h)> | /∑hi I(h)i, where I(h) is the intensity of reflection h, ∑h is the sum over all reflections, and ∑i is the sum over i measurements of reflection h.

cRwork = ∑ | |Fobs| – |Fcalc| | /∑ |Fobs|, where Rfree is calculated for a randomly chosen 5% of reflections, which were not used for structure refinement and Rwork is calculated for the remaining reflections.