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. Author manuscript; available in PMC: 2010 Apr 1.
Published in final edited form as: Trends Genet. 2009 Sep 30;25(10):443–454. doi: 10.1016/j.tig.2009.08.002

Table 1.

Mammalian genomes and SDs

Human (hg18) Chimpanzee (panTro2) Orangutan (panAbe2) Macaque (rheMac2) Mouse (mm8) Rat (rn4) Dog (canFam2) Cow (bosTau4) Opossum (monDom4)
Total content of assembly-detected SDs 5.32% 3.78% 1.18% 1.55% 6.13% 1.60% 0.82% 5.63% 2.70%
Assembly-independent SDs 4.60% 5.14% 6.23% 1.02% 5.48% N/A 3.96% 2.66% N/A
Overlap of assembly-dependent and -independent methods >10Kb 106,042,326 (86.21%) 75,175,287 (82.7%) 48,552,031 (80.48%) 4,320,656 (56.59%) 83,135,830 (85.39%) N/A 35,692,222 (79.66%) 42,369,544 (20.88%) N/A
Size of the non-gapped genome (Mb) 2881 2909 3124 2646 2567 2566 2384 2850 3405