Table 2.
Effect of the choice of k-mer size on the single-end contig N50 for the giant panda assembly using ABySS 1.1.0
k-mer size | 27* | 30 | 32 | 34 | 35 | 36 | 37 | 38 |
---|---|---|---|---|---|---|---|---|
Contig N50 (bp) | 1,381 | 1,724 | 1,863 | 1,940 | 1,952 | 1,942 | 1,924 | 1,860 |
*The k-mer size used for the reported giant panda genome assembly [1].