Table 3.
Distribution of common repeat sequences
| ERIC (127 bp) |
YPAL (167 bp) |
Kristensenii 39 (142 bp) |
IS1541C (708 bp) |
Aldovae3 (154 bp) |
|
|---|---|---|---|---|---|
| E. coli | 0 | 3 | 5 | 0 | 5 |
| Y. pestis | 54 | 43 | 33 | 61 | 38 |
| Y. pseudotuberculosis | 55 | 52 | 29 | 5 | 36 |
| Y. enterocolitica | 63 | 144 | 100 | 3 | 75 |
| Y. aldovae | 6 | 84 | 46 | 0 | 40 |
| Y. bercovieri | 9 | 45 | 6 | 9 | 13 |
| Y. frederiksenii | 0 | 57 | 6 | 0 | 5 |
| Y. intermedia | 2 | 91 | 48 | 0 | 43 |
| Y. kristensenii | 2 | 99 | 70 | 0 | 59 |
| Y. mollaretii | 6 | 62 | 26 | 0 | 20 |
| Y. rohdei | 0 | 37 | 8 | 0 | 7 |
| Y. ruckeri | 45 | 2 | 0 | 0 | 2 |
Three of the repeat sequences found using de novo searches matched the known repeat elements ERIC, YPAL, and IS1541C and are identified as such. Kristensenii39 and Aldovae3 are elements found from de novo searches in the Y. kristensenii and Y. aldovae genomes, respectively.