Table 1.

Ten genes that showed the strongest increased or decreased expression in gastrocnemius compared to quadriceps

probe set	gene name	gene description	Accession (EntrezID)	Fold change	FDR
Strongest up-regulated genes
15438_at	Hoxd9	homeo box D9	15438	7.70	0.000
15430_at	Hoxd10	homeo box D10	15430	7.36	0.000
15437_at	Hoxd8	homeo box D8	15437	4.78	0.000
21952_at	Tnni1	troponin I, skeletal, slow 1	21952	4.46	0.005
17906_at	Myl2	myosin, light polypeptide 2, regulatory, cardiac, slow	17906	3.89	0.004
277898_at	9830102E05Rik	RIKEN cDNA 9830102E05 gene	277898	3.69	0.002
19378_at	Aldh1a2	aldehyde dehydrogenase family 1, subfamily A2	19378	3.61	0.000
21955_at	Tnnt1	troponin T1, skeletal, slow	21955	3.56	0.024
140781_at	Myh7	myosin, heavy polypeptide 7, cardiac muscle, beta	140781	3.26	0.039
21924_at	Tnnc1	troponin C, cardiac/slow skeletal	21924	3.05	0.020
Strongest down-regulated genes
21380_at	Tbx1	T-box 1	21380	-7.27	0.000
50781_at	Dkk3	dickkopf homolog 3 (Xenopus laevis)	50781	-5.40	0.000
69219_at	Ddah1	dimethylarginine dimethylaminohydrolase 1	69219	-2.91	0.000
53311_at	Mybph	myosin binding protein H	53311	-2.66	0.002
18534_at	Pck1	phosphoenolpyruvate carboxykinase 1, cytosolic	18534	-2.62	0.015
14311_at	Cidec	cell death-inducing DFFA-like effector c	14311	-2.57	0.009
18616_at	Peg3	paternally expressed 3	18616	-2.49	0.005
12583_at	Cdo1	cysteine dioxygenase 1, cytosolic	12583	-2.45	0.004
246747_at	BC054059	cDNA sequence BC054059	246747	-1.96	0.010
20249_at	Scd1	stearoyl-Coenzyme A desaturase 1	20249	-1.79	0.018

By microarray analysis we found 161 that were differentially expressed in the gastrocnemius as compared with the quadriceps from mice fed an 8-week LFD. This table shows the ten strongest up-regulated and ten strongest down-regulated genes in the gastrocnemius as compared with the quadriceps (n = 10).