Table 1.
PCR primers used for Sequenom analysis
| Name | Sequence | Chromosomal location | Product size (bp) |
|---|---|---|---|
| SNRPN_L | AGGAAGAGAGTTGGGAGGTATTATTTTGGGTTGAA | ChrU:24360-23919 | 437 |
| SNRPN_R | CAGTAATACGACTCACTATAGGGAGAAGGCTAACCCCAAACCTCCAAAAATTATC | ||
| IGF2_L | AGGAAGAGAGGGGTATTTGGGGTAGTTTAGG | Chr29:3633319-3633749 | 521 |
| IGF2_R | CAGTAATACGACTCACTATAGGGAGAAGGCTATTCTAATCCCCTCAACCAAATAAA | ||
| CDKN1C_L | AGGAAGAGAGGTAGTGGTATATTTAGTTGGAAGTTGTAGT | Chr29:2954381-2953897 | 485 |
| CDKN1C_R | CAGTAATACGACTCACTATAGGGAGAAGGCTTAGTTAGGTTAGAGTTAGTT | ||
| HAND1_L | AGGAAGAGAGGAGAAAGGTTTTTGGGGATAAAATT | Chr7:1101938-1101390 | 549 |
| HAND1_R | CAGTAATACGACTCACTATAGGGAGAAGGCTCAAACCCTACAACTAACAAAACATCC | ||
| ASCL2_L | AGGAAGAGAGGTATTAGGGGGAGTTTTGGTAG | Chr29:3526331-3526685 | 354 |
| ASCL2_R | CAGTAATACGACTCACTATAGGGAGAAGGCTCTAAAACCCCAAATTCACCAACTTC | ||
| KCNQ1_L | AGGAAGAGAGGGGTTTGGTTAAGAAGTGTTTTTTTT | Chr29:3365714-3365215 | 500 |
| KCNQ1_R | CAGTAATACGACTCACTATAGGGAGAAGGCTAATCAAACCCACAAAACCCTAAACTT | ||
| Dio3_L | AGGAAGAGAGTTTGTATTTGTTTGGTTTGTTTTAA | Chr21:1453786-1454238 | 453 |
| Dio3_R | CAGTAATACGACTCACTATAGGGAGAAGGCTCAACTCTTCATCAACAATAAAACTC | ||
| KCNQ1OT1_L | AGGAAGAGAGTAGTTGATTGGATAGTTTGTAGGGG | Chr29:3133697-3133352 | 346 |
| KCNQ1OT1_R | CAGTAATACGACTCACTATAGGGAGAAGGCTCCACAAATATTCCTCAAAATCACTC | ||
| STAT5_L | AGGAAGAGAGTTTGTTAGAGGTAGTTGATTTTTGAGGA | Chr19:872990-873467 | 478 |
| STAT5_R | CAGTAATACGACTCACTATAGGGAGAAGGCTAAAAAAACAAAACACTCCCTCTCTC | ||
| GR_R | CAGTAATACGACTCACTATAGGGAGAAGGCTAATTTTCTCTATAATTTCTCTTCTTACC | Chr7: 2747426-2747103 | 324 |
| GR_L | AGGAAGAGAGTTTTTTTGAAGTTTTTTTAGAGGG | ||
| DKK_001_L | AGGAAGAGAGTTTTTTTTGAGTTTTTTTGAGATGA | Chr26:336954-336488 | 467 |
| DKK_001_R | CAGTAATACGACTCACTATAGGGAGAAGGCTCACTTAAACACCCAATACCACACT | ||
| DKK_002_L | AGGAAGAGAGGTGTGGTATTGGGTGTTTAAGTGT | Chr26: 336510-336157 | 534 |
| DKK_002_R | CAGTAATACGACTCACTATAGGGAGAAGGCTCCTAAAATCCTTTCTAAAAATCCTC | ||
| CSF-1_L | AGGAAGAGAGGTAGTTTTTGGAGTAGTTGTAGGGT | Chr3: 629601-630161 | 561 |
| CSF-1_R | CAGTAATACGACTCACTATAGGGAGAAGGCTCAAAATAATTTCCCATAAACCACATAC | ||
| Satellite I_L | AGGAAGAGAGTGTAGATTGGGGATAGGAGAGTTAG | N/A | 345 |
| Satellite I_R | CAGTAATACGACTCACTATAGGGAGAAGGCTCCTACTTTATCTAAAAAAAATTACCTTCC | ||
| Satellite II_L | AGGAAGAGAGTTTGGTTTTAGGTTGGGAGTTTAAAG | N/A | 278 |
| Satellite II_R | CAGTAATACGACTCACTATAGGGAGAAGGCTAAAACAACAATCAAACACCACTCAC | ||
| Satellite alpha_L | AGGAAGAGAGTTTTTTTTGATTTGGATAGGAGGG | N/A | 279 |
| Satellite alpha_R | CAGTAATACGACTCACTATAGGGAGAAGGCTACTATATTTAAAACCAAAAATTTTTCC | ||