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Alignment time comparison of various numbers of mammalian mtDNA genomes (complete sequences)
| No. of sequences compared | |||
|---|---|---|---|
| Method | 50 | 100 | 200 |
| MISHIMA + MAFFT | 00:06:50 | 00:10:24 | 00:19:03 |
| CLUSTAL W | 02:15:04 | 05:05:20 | 10:40:31 |
| MUSCLE | 00:46:13 | 01:38:59 | ----- |
| MAFFT | 00:12:13 | 00:33:36 | 00:53:38 |
| Nucleotide diversity | 0.249 | 0.274 | 0.262 |
