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Alignment time of 4 complete genomes of Streptococcus pyogenes with various settings of MISHIMA
| Method | Alignment time |
|---|---|
| MISHIMA -max-depth = 1 -aligner = clustalw | 10:08:52 |
| MISHIMA -max-depth = 2 -aligner = clustalw | 02:54:48 |
| MISHIMA -max-depth = 3 -aligner = clustalw | 02:33:44 |
| MISHIMA (unlimited depth) -aligner = clustalw | 02:43:03 |
| MISHIMA -max-depth = 1 -align-seeds-only | 00:00:27 |
