Table 4.
Correlation coefficients between the five methods in three marker selection sets in the Vis Island dataset
| MLH | FPLINK | FADC | FEstimSPT | FEstim | ||
|---|---|---|---|---|---|---|
| Full marker set | MLH | 1.00 | -1.00 | -1.00 | -0.67 | * |
| FPLINK | -1.00 | 1.00 | 0.99 | 0.67 | * | |
| FADC | -1.00 | 0.99 | 1.00 | 0.66 | * | |
| FEstimSPT | -0.67 | 0.67 | 0.66 | 1.00 | * | |
| FEstim | * | * | * | * | * | |
| M0.1 | MLH | 1.00 | -1.00 | -0.99 | -0.71 | -0.54 |
| FPLINK | -1.00 | 1.00 | 0.99 | 0.74 | 0.60 | |
| FADC | -0.99 | 0.99 | 1.00 | 0.78 | 0.63 | |
| FEstimSPT | -0.71 | 0.74 | 0.78 | 1.00 | 0.55 | |
| FEstim | -0.54 | 0.60 | 0.63 | 0.55 | 1.00 | |
| M0.05 | MLH | 1.00 | -1.00 | -0.99 | -0.73 | -0.64 |
| FPLINK | -1.00 | 1.00 | 0.99 | 0.73 | 0.64 | |
| FADC | -0.99 | 0.99 | 1.00 | 0.75 | 0.64 | |
| FEstimSPT | -0.73 | 0.73 | 0.75 | 1.00 | 0.51 | |
| FEstim | -0.64 | 0.64 | 0.64 | 0.51 | 1.00 |
All correlations were significant at the level of P < 0.001
All FPLINK and FADC values that were negative were set to zero in these correlations, in order to allow comparisons across different methods since FEstim does not provide negative values
*FEstim was not calculated for the full marker set due to LD