Table 1.
Data sets of LTR sequence sets and other genomic features
| Genomic features | Seqsa | Total size (bp) | HybMap probesb | RNA-Seq readsc |
|---|---|---|---|---|
| LTRs | ||||
| Full-length LTR elements | 13 | 63855 | 1032d | 901d |
| Solitary LTRs | 214 | 67938 | 1298 | 817d |
| Background | ||||
| Intergenic | 3206 | 2796112 | 59528 | 300955 |
| Intronic | 943 | 177104 | 4380 | 6939 |
| RNA genes | ||||
| tRNAs | 170 | 13130 | 28 | 290 |
| snoRNAs | 23 | 4073 | 91 | 2941 |
| Highly expressed protein-coding genes | ||||
| Histone proteins | 12 | 12964 | 422 | 8672 |
| Ribosomal proteins | 124 | 62661 | 1794 | 236760 |
| Lowly expressed protein-coding genes | ||||
| Repair genes (rec and rad) | 43 | 82258 | 2860 | 10833 |
a) Number of sequences in set
b) HybMap 60-mers mapping to sequence sets. Both forward and reverse strand probes included.
c) RNA-Seq sequence reads from growth stage mapping to sequence sets.
d) Number provided is probes and reads mapping exclusively within sequence sets (otherwise these are mapping uniquely)