Table 1.
List of completely sequenced Acinetobacter plasmids and chromosomes used in this work.
| Strains | Plasmids | Chromosomes | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Species and/or designation | Origin | n. | Name | A.N. | Length (bp) | ORF(s) | n. | Length (bp) | A.N. | ORF(s) |
| Acinetobacter baumannii | Clin. | 1 | pABIR | NC_010481 | 29823 | 26 | n.d. | |||
| Acinetobacter baumannii ATCC19606T | Clin. | 1 | pMAC | NC_006877 | 9540 | 11 | n.d. | |||
| Acinetobacter baumannii | Clin. | 1 | pAB02 | AY228470 | 4162 | 6 | n.d. | |||
| Acinetobacter baumannii ACICU | Clin. | 2 | pACICU1 | NC_010605 | 28279 | 28 | 1 | 3904116 | NC_010611 | 3667 |
| pACICU2 | NC_010606 | 64366 | 64 | |||||||
| Acinetobacter baumannii ATCC 17978 | Clin. | 2 | pAB1 | NC_009083 | 13408 | 11 | 1 | 3976747 | NC_009085 | 3351 |
| pAB2 | NC_009084 | 11302 | 5 | |||||||
| Acinetobacter baumannii AYE | Clin. | 4 | p1ABAYE | NC_010401 | 5644 | 7 | 1 | 3936291 | NC_010410 | 3607 |
| p2ABAYE | NC_010402 | 9661 | 11 | |||||||
| p3ABAYE | NC_010403 | 94413 | 82 | |||||||
| p4ABAYE | NC_010404 | 2726 | 5 | |||||||
| Acinetobacter baumannii SDF | Body lice | 3 | p1ABSDF | NC_010395 | 6106 | 8 | 1 | 3421954 | NC_010400 | 2913 |
| p2ABSDF | NC_010396 | 25014 | 30 | |||||||
| p3ABSDF | NC_010398 | 24922 | 24 | |||||||
| Acinetobacter baumannii AB0057 | Clin. | 1 | pAB0057 | NC_011585 | 8729 | 11 | 1 | 4050513 | NC_010410 | 3790 |
| Acinetobacter baumannii AB307-0294 | Clin. | 0 | 1 | 3760981 | NC_011595 | 3451 | ||||
| Acinetobacter sp. EB104 | Unknown | 1 | pAC450 | NC_002760 | 4379 | 4 | n.d. | |||
| Acinetobacter sp. SUN | Clin. | 1 | pRAY | NC_000923 | 6076 | 10 | n.d. | |||
| Acinetobacter venetianus | Env. | 2 | pAV1 | NC_010309 | 10820 | 11 | n.d. | |||
| pAV2 | NC_010310 | 15135 | 16 | |||||||
| Acinetobacter sp LUH5605 | Env. | 1 | Ptet5605 | AY228470 | 3727 | 4 | n.d. | |||
| Acinetobacter sp BW3 | Env. | 1 | pKLH207 | AJ486856 | 9910 | 16 | n.d. | |||
| Acinetobacter calcoaceticus KHW14 | Env. | 1 | pKLH201 | AJ251307 | 11191 | 14 | n.d. | |||
| Acinetobacter calcoaceticus KHP18 | Env. | 1 | pKLH2 | AF213017 | 6838 | 12 | n.d. | |||
| Acinetobacter sp ED23-35 | Env. | 1 | pKLH208 | AJ251272 | 9435 | 15 | n.d. | |||
| Acinetobacter sp ED45-25 | Env. | 1 | pKLH205 | AJ459234 | 8561 | 13 | n.d. | |||
| Acinetobacter junii | Env. | 1 | pKLH203 | AJ486855 | 7195 | 12 | n.d. | |||
| Acinetobacter sp LS56-7 | Env. | 1 | pKLH204 | AJ487050 | 9489 | 15 | n.d. | |||
| Acinetobacter lwoffii | Env. | 1 | pKLH202 | AJ486857 | 9471 | 17 | n.d. | |||
| Acinetobacter sp YAA* | Env. | 1 | pYA1 | D86080 | 7407 | 5 | n.d. | |||
| Acinetobacter baylyi ADP1 | Env. | 0 | 1 | 3598621 | NC_005966 | 3307 | ||||
| Tot. | 29 | 493 | 7 | 24086 | ||||||
Sequences were downloaded from the NCBI web-site http://www.ncbi.nlm.nih.gov/genomes/genlist.cgi?taxid=2&type=1&name=Bacteria%20Complete%20Chromosomes and from the FTP repository ftp://ftp.ncbi.nih.gov/refseq/release/plasmid/ (as on 31st March 2009 ). N.d. "not determined", A.N. "accession number".
* These plasmids were retrieved in strains lacking a clear taxonomical affiliation [56,57]