Table 3.

Differentially accumulated transcripts between LoPro and HiPro identified by Affymetrix^® Soy GeneChip

#	Affymetrix® ID	LoPro	HiPro	Ratio of Means LoPro/HiPro	P value	FDR	Ch	Start	Stop	Uniprot Desc.	E-value
1	Gma.7719.1.A1_at	7705	401	19.22	2.43 × 10-15	9.16 × 10-11	20	26511887	26511422	Mov34/MPN/PAD-1	1 × 10-19
	GmaAffx.74372.1.S1_at	2478	502	4.94	2.63 × 10-12	1.98 × 10-08	20	26512404	26511978	"	"
2	Gma.1680.1.S1_x_at	289926	63810	4.54	5.51 × 10-15	1.04 × 10-10	20	32331958	32332062	Hypothetical protein	6 × 10-24
	Gma.1680.1.S1_at	134237	30039	4.47	1.05 × 10-14	1.32 × 10-10	20	32331999	32332062	"	"
3	GmaAffx.49130.1.S1_at	10163	842	12.06	4.38 × 10-13	4.12 × 10-09	20	30182754	30182479	na	na
	GmaAffx.67113.1.S1_at	8643	1438	6.01	2.19 × 10-10	9.17 × 10-07	20	30182353	30181939	"	"
4	GmaAffx.65278.1.A1_at	2695	5039	0.53	5.95 × 10-12	3.74 × 10-08	20	31053180	31054158	na	na
5	Gma.926.1.A1_at	2047	1031	1.99	2.99 × 10-11	1.61 × 10-07	20	31812657	31812894	na	na
6	GmaAffx.55722.1.S1_at	12024	5126	2.35	1.01 × 10-10	4.74 × 10-07	20	26515177	26514175	Hypothetical protein	2 × 10-27
7	GmaAffx.69807.1.A1_at	8369	13209	0.63	8.08 × 10-07	2.42 × 10-03	17	1020953	1020579	Hypothetical protein	3 × 10-23
8	Gma.10034.1.A1_at	1563	2548	0.61	8.35 × 10-07	2.42 × 10-03	18	13340405	13340201	na	na
9	GmaAffx.42487.1.S1_at	9513	5786	1.64	1.51 × 10-06	3.79 × 10-03	18	12183748	12183617	na	na
10	GmaAffx.47978.1.S1_at	3007	1378	2.18	2.31 × 10-05	4.58 × 10-02	7	897321	897126	Putative phosphatase	3 × 10-75

Each Affymetrix^® probeset identifier (ID) is shown with corresponding normalized expression values for LoPro and HiPro and the ratio of mean LoPro divided by mean HiPro values. Criteria for the list: FDR < 0.05 and fold-change > 1.5. The Uniprot description for each Affymetrix^® ID is accompanied by the E-value for the alignment; na = not applicable, no significant alignment.