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. 2009 Jul;26(7):979–993. doi: 10.1089/neu.2008.0762

Table 3.

Gene List after FDR p-cut-off ≤ 0.05 and Differential Expression ≥ 1.5 Fold Change

Genbank ID RG/Med ratio Common Description *Network
NM_012560 15.50 BF1A; Foxo1; forkhead box G1(Foxg1) I
BM385445 3.43 Top2a Topoisomerase (DNA) 2 alpha II
BF284168 3.09   Transcribed locus  
BE107070 3.03 Sox11 SRY-box containing gene 11 II
AA944326 2.88   EST199825 Normalized rat embryo, Bento Soares Rattus sp. cDNA clone REMAF43 3' end, mRNA sequence.  
AI012949 2.84   Transcribed locus, moderately similar to XP_489350.1 RIKEN cDNA 2700063P19 [Mus musculus]  
AI172110 2.82   EST218105 Normalized rat muscle, Bento Soares Rattus sp. cDNA clone RMUBV06 3' end, mRNA sequence.  
AW524041 2.33 Zbtb9 Zinc finger and BTB domain containing 9  
BF554576 2.27 Sox11 SRY-box containing gene 11 II
BF408872 2.25 Imp1 Insulin-like growth factor 2, binding protein 1 II
BE107098 2.19   Transcribed locus  
BE113173 2.16 Tubb2b microtubule-based movement protein polymerization Tubulin, beta 2b II
BM385870 2.13 Zbtb 10 Zinc finger and BTB domain containing 10 III
AW144239 2.09 Fstl3 Follistatin-like 3 I
BI285065 2.07 Tgfb1i4 Transforming growth factor beta 1 induced transcript 4 II
AA956727 1.99   Splicing factor, arginine/serine-rich 3 (SRp20) (predicted) I
AI180454 1.94   Similar to IGF-II mRNA-binding protein 2 (predicted) II
M24024 1.91 RT1Aw2 RT1 class Ib, locus Aw2 (RT1-Aw2) I
BE113443 1.89   Kinesin family member 23 (predicted) II
AF030088 1.85 Vesl-1; HOMER1F homer homolog 1 (Drosophila) (Homer1) I
BF398677 1.84 Arhgef12 Rho guanine nucleotide exchange factor (GEF) 12 I
BF409715 1.81   Similar to 106 kDa O-GlcNAc transferase-interacting protein (predicted)  
AA800639 1.80   Transcribed locus  
AI058451 1.80   Similar to IGF-II mRNA-binding protein 2 (predicted) II
BI289386 1.78   Similar to BCoR protein (BCL-6 corepressor)  
AI598485 1.78   Transcribed locus  
AI712582 1.77   Glutamine and serine rich 1 (predicted)  
BE119432 1.77   Transcribed locus  
AA956336 1.73   Anaphase promoting complex subunit 10 (predicted)  
AI072161 1.73   UI-R-C2-mz-f-11-0-UI.s1 UI-R-C2 Rattus norvegicus cDNA clone UI-R-C2-mz-f-11-0-UI 3', mRNA sequence.  
U06434 1.71 Scya4; Mip1-b chemokine (C-C motif ) ligand 4 (Ccl4) I
BE114260 1.70   Transcribed locus  
BF408816 1.68   UI-R-BT1-bne-g-03-0-UI.s1 UI-R-BT1 Rattus norvegicus cDNA clone UI-R-BT1-bne-g-03-0-UI 3', mRNA sequence.  
BI276223 1.64   Similar to mKIAA0215 protein  
BG374178 1.64 Kitl Kit ligand I
AI639117 1.64 cBf complement factor B II
BF419397 1.63   Transcribed locus  
BI282932 1.62 C1qr1 Complement component 1, q subcomponent, receptor 1; Lymphocyte antigen 68 IV
BI275740 1.62   Similar to triggering receptor expressed on myeloid cells-like 1  
AI044343 1.62   Similar to cofactor required for Sp1 transcriptional activation Subunit 2, 150kDa(predicted)  
AA963477 1.60 TSP-2 Thrombospondin-2 I
BE107208 1.60   UI-R-BS1-ayr-b-04-0-UI.s1 UI-R-BS1 Rattus norvegicus cDNA clone UI-R-BS1-ayr-b-04-0-UI 3', mRNA sequence.  
BF404982 1.59 Pnpt1 Polyribonucleotide nucleotidyltransferase 1  
AI172172 1.59 Aprin Androgen-induced proliferation inhibitor (predicted)  
BF416058 1.58   UI-R-CA0-bkh-f-11-0-UI.s1 UI-R-CA0 Rattus norvegicus cDNA clone UI-R-CA0-bkh-f-11-0-UI 3', mRNA sequence.  
AA892240 1.58   Hypothetical LOC361786  
AI169080 1.57   Transcribed locus  
AA858605 1.56   Similar to Wolf-Hirschhorn syndrome candidate 1 protein isoform 1  
AW434912 1.54   Transcribed locus  
AA893192 1.54   EST196995 Normalized rat kidney, Bento Soares Rattus sp. cDNA clone RKIBD36 3' end, mRNA sequence.  
BI274401 1.54 P4ha1 Procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide I
BF564309 1.53   UI-R-C4-aln-a-11-0-UI.r1 UI-R-C4 Rattus norvegicus cDNA clone UI-R-C4-aln-a-11-0-UI 5', mRNA sequence.  
AI175791 1.52   Transcribed locus  
BE117291 1.52   Similar to chromosome X open reading frame 23  
AI072424 1.51   Synaptotagmin binding, cytoplasmic RNA interacting protein  
AI010254 1.51 Cachd_1 Cache domain containing 1 (predicted)  
BF546659 1.50 Syncrip Synaptotagmin binding, cytoplasmic RNA interacting protein  
BE115061 1.50 Lef1 Lymphoid enhancer binding factor 1 II
AI111816 0.66   Transcribed locus  
BF556812 0.31   Transcribed locus  
*

Network I: Cell cycle, Cell proliferation, morphology. II: Cancer, Embryo and Tissue development. III: Cell death, Immune response. IV: Cell-cell signal, Cell growth and Proliferation.