TABLE 1.
Primer or probe | Sequence (5′-3′) | Target, specificity | Temp (°C)a | % FAb |
---|---|---|---|---|
Primers | ||||
64F | GGA CGG TAA CAT TGT GGT GC | 16S rRNA gene, X. bocki gammaproteobacterial endosymbiont | 54 | |
1417F | CGA AGG AGA GAC GGA GAA GGT TAG | 23S rRNA gene, X. bocki gammaproteobacterial endosymbionts (sequencing primer) | 59 | |
Probes | ||||
Cps-1353modc | GAC GTT ATT GCT GAC ACG | 16S rRNA, X. bocki chlamydial endosymbiont and relatives | 15 | |
XenoGam441 | ATA GCC TTC CTC AGT GAT | 16S rRNA, X. bocki gammaproteobacterial endosymbiont | 15 | |
XenoGam666 | CGG AAA TTC CTC TAC CC | 16S rRNA, X. bocki gammaproteobacterial endosymbiont and relatives | 15 | |
XenoGam727 | TCC AGG TAG ACG CCT TC | 16S rRNA, X. bocki gammaproteobacterial endosymbiont and relatives | 15 |
Temp, applied primer annealing temperature for PCR.
FA, applied formamide concentration in the hybridization buffer for FISH.
Modified from reference 28.