TABLE 1.
Transcriptional response for inorganic energy source utilization
| Category/function | ORF | Annotation | Change (n-fold) | Time point comparison (days) |
|---|---|---|---|---|
| Iron oxidation | Msed_0467 | Transporter | +6.8 | 0 vs 9 |
| Msed_0469 | foxG | +3.8 | 0 vs 9 | |
| Msed_0477 | foxD | +6.3 | 0 vs 9 | |
| Msed_0478 | foxC | +5.8 | 0 vs 9 | |
| Msed_0479 | Unique hypothetical protein (80 aa) | +15.1 | 0 vs 9 | |
| Msed_0480 | foxB | +12.5 | 0 vs 9 | |
| Msed_0484 | foxA | −3.0 | 0 vs 3 | |
| Msed_0485 | foxA′ | +5.1 | 0 vs 9 | |
| Msed_0486 | CBS domain | −11.5 | 0 vs 9 | |
| Msed_0500 | soxN | −3.0 | 0 vs 9 | |
| Msed_0501 | soxL2 | −4.7 | 0 vs 3 | |
| Msed_0502 | cbsA′ | −3.6 | 0 vs 9 | |
| Msed_0504 | cbsA | −3.2 | 0 vs 9 | |
| Msed_0966 | rus | −10.5 | 0 vs 9 | |
| Fe/inorganic electron transport | Msed_0510 | pfor β | −3.7 | 0 vs 3 |
| Msed_0511 | pqqE-like | −15.5 | 0 vs 3 | |
| Msed_0512 | pqqE-like | −24.3 | 0 vs 3 | |
| Msed_0513 | Conserved hypothetical | −20.0 | 0 vs 3 | |
| Msed_0514 | U32 peptidase | −18.7 | 0 vs 3 | |
| Msed_0515 | pqqE-like | −6.0 | 0 vs 3 | |
| Msed_0516 | Conserved hypothetical | −6.4 | 0 vs 3 | |
| Fe oxidation/S oxidation | Msed_2030 | doxE | −11.4 | 0 vs 9 |
| Msed_2031 | doxC | −2.4 | 0 vs 9 | |
| Msed_2032 | doxB | −5.1 | 0 vs 9 | |
| Msed_0570 | doxB2 | −3.7 | 0 vs 9 | |
| Msed_1039 | sqr-like | −3.4 | 0 vs 9 | |
| Msed_0364 | doxA | −3.1 | 0 vs 9 | |
| S oxidation/H2 utilization | Msed_0285 | soxD | −2.5 | 0 vs 3 |
| Msed_0286 | soxD′ | −3.0 | 0 vs 3 | |
| Msed_0288 | soxL | +2.4 | 3 vs 9 | |
| H2 utilization | Msed_0945 | hynL | +4.7 | 3 vs 9 |
| Msed_0946 | isp1 | +3.6 | 3 vs 9 | |
| Msed_0948 | Conserved hypothetical | +4.4 | 3 vs 9 | |
| Msed_0949 | Conserved hypothetical | +3.9 | 3 vs 9 | |
| Inorganic carbon fixation | Msed_0390 | Carbonic anhydrase | +3.4 | 3 vs 9 |
| Msed_0147 | Acetyl-/propionyl-CoA carboxylase | +5.6 | 3 vs 9 | |
| Msed_0148 | Acetyl-/propionyl-CoA carboxylase | +3.3 | 3 vs 9 | |
| Msed_1375 | Acetyl-/propionyl-CoA carboxylase | +4.7 | 3 vs 9 | |
| Msed_0709 | Malonyl-/succinyl-CoA reductase | +5.7 | 3 vs 9 |