TABLE 1.
Compounda | Amino acid at position: |
MIC (μg/ml) for S. aureus 42b |
||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
2 | 3 | 5 | 6 | 8 | 9 | 11 | 12 | 13 | − Surf | + Surf (1%) | Ratio (+/−) | |
Daptomycin | d-Asn | Asp | Gly | Orn | d-Ala | Asp | d-Ser | 3mGlu | Kyn | 0.5 | 64 | 128 |
CB-181,220 | d-Asn | Asp | Gly | Orn | d-Ala | Asp | d-Ser | 3mGlu | Kyn | 0.5 | 64 | 128 |
CB-182,098 | d-Asn | Asp | Gly | Orn | d-Ala | Asp | d-Ser | 3mGlu | Trp | 1 | 32 | 32 |
CB-182,107 | d-Asn | Asp | Gly | Orn | d-Ala | Asp | d-Ser | 3mGlu | Ile | 2 | 8 | 4 |
CB-182,106 | d-Asn | Asp | Gly | Orn | d-Ala | Asp | d-Ser | 3mGlu | Val | 4 | 8 | 2 |
CB-182,130 | d-Asn | Asp | Gly | Orn | d-Ala | Asp | d-Ser | Glu | Kyn | 8 | 16 | 2 |
CB-182,166 | d-Asn | Asp | Gly | Orn | d-Ala | Asp | d-Ala | 3mGlu | Kyn | 1 | 16 | 16 |
CB-182,290 | d-Asn | Asp | Gly | Orn | d-Ala | Asp | d-Asn | 3mGlu | Kyn | 1 | 16 | 16 |
CB-182,123 | d-Asn | Asp | Gly | Orn | d-Ser | Asp | d-Ser | 3mGlu | Kyn | 1 | 32 | 32 |
CB-182,296 | d-Asn | Asp | Gly | Orn | d-Lys | Asp | d-Asn | 3mGlu | Kyn | 1 | 32 | 32 |
A54145E | d-Glu | hAsn | Sar | Ala | d-Lys | moAsp | d-Asn | 3mGlu | Ile | 1 | 32 | 32 |
A54145D | d-Glu | hAsn | Sar | Ala | d-Lys | moAsp | d-Asn | Glu | Ile | 2 | 4 | 2 |
CB-182,548 | d-Glu | hAsn | Sar | Ala | d-Lys | moAsp | d-Ala | 3mGlu | Ile | 1 | 16 | 16 |
CB-182,332 | d-Glu | hAsn | Sar | Ala | d-Lys | moAsp | d-Ser | 3mGlu | Ile | 2 | 16 | 8 |
CB-182,571 | d-Glu | hAsn | Sar | Ala | d-Ala | moAsp | d-Asn | 3mGlu | Ile | 1 | 32 | 32 |
CB-182,549 | d-Glu | hAsn | Sar | Ala | d-Ser | moAsp | d-Asn | 3mGlu | Ile | 1 | 16 | 16 |
CB-182,510 | d-Glu | hAsn | Sar | Ala | d-Asn | moAsp | d-Asn | 3mGlu | Ile | 8 | 64 | 8 |
CB-182,363 | d-Glu | Asn | Sar | Ala | d-Lys | moAsp | d-Asn | 3mGlu | Ile | 2 | 16 | 8 |
CB-182,575 | d-Asn | hAsn | Sar | Ala | d-Lys | moAsp | d-Asn | 3mGlu | Ile | 2 | 4 | 2 |
CB-182,509 | d-Glu | hAsn | Sar | Ala | d-Lys | moAsp | d-Ala | Glu | Ile | 8 | 16 | 2 |
CB-182,336 | d-Glu | hAsn | Sar | Ala | d-Lys | moAsp | d-Ser | Glu | Ile | 64 | 128 | 2 |
CB-182,567 | d-Glu | hAsn | Sar | Ala | d-Ala | moAsp | d-Asn | Glu | Ile | 4 | 8 | 2 |
CB-182,532 | d-Glu | hAsn | Sar | Ala | d-Ser | moAsp | d-Asn | Glu | Ile | 8 | 8 | 1 |
CB-182,531 | d-Glu | hAsn | Sar | Ala | d-Asn | moAsp | d-Asn | Glu | Ile | 16 | 16 | 1 |
CB-182,444 | d-Asn | hAsn | Sar | Ala | d-Lys | moAsp | d-Asn | Glu | Ile | 8 | 8 | 1 |
CB-182,561 | d-Asn | Asp | Sar | Ala | d-Lys | moAsp | d-Asn | 3mGlu | Ile | 1 | 2 | 2 |
CB-182,560 | d-Asn | Asp | Sar | Ala | d-Lys | moAsp | d-Asn | Glu | Ile | 8 | 16 | 2 |
Daptomycin has a decanoyl side chain. All other compounds have anteiso-undecanoyl side chains. Amino acid substitutions are shown in boldface. The compounds related to daptomycin (CB-181,220 to CB-182,296) were generated in previous studies (32, 35, 36). A54145E and A54145D are natural lipopeptide factors produced by S. fradiae (8, 9); the latter is highly enriched by fermentation of an lptI mutant in a medium supplemented with l-Ile (Alexander et al., submitted).
− Surf, without surfactant; + Surf (1%), in the presence of 1% surfactant; ratio (+/−), ratio of the MIC in the presence of surfactant to the MIC in the absence of surfactant.