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. 2010 Feb 1;78(4):1593–1600. doi: 10.1128/IAI.01297-09

TABLE 1.

Primers used for amplification and sequencing

Primer Designationa Gene Positionb Sequence (5′-3′)c
P160R JHP0833 babA 444-424 ATACCCTGGCTCGTTGTTGAA
BabAF4 JHP0833 babA 856-876 GCGAGCACGCTCATTAACACC
BabAF1253 JHP0833 babA 2193-2216 AACGGATCCCAGGCTTTATAGCGTGTATTTGAA
BabAR1 JHP0833 babA 723-705 TTTGCCGTCTATGGTTTGG
BabAR129 JHP0833 babA 1002-983 CATCTTTTGGATCGCGCTGA
BabAR10 JHP0833 babA 1281-1261 ACCAGTACCAGCGGTTGATGG
BabAR1252 JHP0833 Intergenic −17 to −46* AACGAGCTCGGATTAAATTGGATTAGTATTAGGGATTTC
BabAR927 JHP0833 Intergenic 997-977† GTTCATTATAGCACAAGCGAT
HypDF1 JHP0835 hypD 675-697 TTTTGAGCCGGTGGATATATTAG
HypDF2 JHP0835 hypD 627-648 AATGCGGCCGCCTATGCTCCTTTAGTGGATCGC
0895R NAd Predicted 288-267 AATCTCGAGCACATCTCTCATGGCTTGTTGC
1162R JHP1162 Predicted 247-228 CTCCCTTGCGGTATAACCG
BabBR1 JHP1164 babB 772-750 TCGCTTGTTTTAAAAGCTCTTGA
S18F1 JHP1165 s18 197-218 CTTTAATCCCCTACATTGTGGA
P178R JHP1164 babB 481-459 CATGTCCTGGCTCATAATACGAA
UF1 NA cat NA CGACTTTGGTTAACCCGCAAATCCCAT
CamF NA cat NA GATATAGATTGAAAAGTGGATAGATTTA
C2CamR NA cat NA AACGGATCCTTATCAGTGCGACAAACTGGGAT
RpsLCamR NA rpsL NA TAAATCTATCCACTTTTCAATCTATATCATCTAACGGATTTGTCTGTATG
UR6 NA rpsL NA GGGCGTGGTGGATTATGTGTATTA
RpsLF NA rpsL NA AACGAGCTCGATGCTTTATAACTATGGATTAAACAC
a

The designation corresponds to H. pylori strain J99.

b

The position corresponds to H. pylori strain J99. *, This position is in the intergenic region upstream from the babA start codon in H. pylori strain 7.13; †, this position is in the intergenic region downstream from the babA stop codon in H. pylori strain 7.13.

c

Boldface nucleotides are complementary to the primer CamF.

d

NA, not applicable.

HHS Vulnerability Disclosure