TABLE 1.
Primers used for amplification and sequencing
Primer | Designationa | Gene | Positionb | Sequence (5′-3′)c |
---|---|---|---|---|
P160R | JHP0833 | babA | 444-424 | ATACCCTGGCTCGTTGTTGAA |
BabAF4 | JHP0833 | babA | 856-876 | GCGAGCACGCTCATTAACACC |
BabAF1253 | JHP0833 | babA | 2193-2216 | AACGGATCCCAGGCTTTATAGCGTGTATTTGAA |
BabAR1 | JHP0833 | babA | 723-705 | TTTGCCGTCTATGGTTTGG |
BabAR129 | JHP0833 | babA | 1002-983 | CATCTTTTGGATCGCGCTGA |
BabAR10 | JHP0833 | babA | 1281-1261 | ACCAGTACCAGCGGTTGATGG |
BabAR1252 | JHP0833 | Intergenic | −17 to −46* | AACGAGCTCGGATTAAATTGGATTAGTATTAGGGATTTC |
BabAR927 | JHP0833 | Intergenic | 997-977† | GTTCATTATAGCACAAGCGAT |
HypDF1 | JHP0835 | hypD | 675-697 | TTTTGAGCCGGTGGATATATTAG |
HypDF2 | JHP0835 | hypD | 627-648 | AATGCGGCCGCCTATGCTCCTTTAGTGGATCGC |
0895R | NAd | Predicted | 288-267 | AATCTCGAGCACATCTCTCATGGCTTGTTGC |
1162R | JHP1162 | Predicted | 247-228 | CTCCCTTGCGGTATAACCG |
BabBR1 | JHP1164 | babB | 772-750 | TCGCTTGTTTTAAAAGCTCTTGA |
S18F1 | JHP1165 | s18 | 197-218 | CTTTAATCCCCTACATTGTGGA |
P178R | JHP1164 | babB | 481-459 | CATGTCCTGGCTCATAATACGAA |
UF1 | NA | cat | NA | CGACTTTGGTTAACCCGCAAATCCCAT |
CamF | NA | cat | NA | GATATAGATTGAAAAGTGGATAGATTTA |
C2CamR | NA | cat | NA | AACGGATCCTTATCAGTGCGACAAACTGGGAT |
RpsLCamR | NA | rpsL | NA | TAAATCTATCCACTTTTCAATCTATATCATCTAACGGATTTGTCTGTATG |
UR6 | NA | rpsL | NA | GGGCGTGGTGGATTATGTGTATTA |
RpsLF | NA | rpsL | NA | AACGAGCTCGATGCTTTATAACTATGGATTAAACAC |
The designation corresponds to H. pylori strain J99.
The position corresponds to H. pylori strain J99. *, This position is in the intergenic region upstream from the babA start codon in H. pylori strain 7.13; †, this position is in the intergenic region downstream from the babA stop codon in H. pylori strain 7.13.
Boldface nucleotides are complementary to the primer CamF.
NA, not applicable.