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. 2010 Feb 9;78(4):1509–1519. doi: 10.1128/IAI.00862-09

TABLE 2.

Diversity analysis based upon rarefaction, OTU, ACE, Chao1, and modeling of rarefaction to predict maximum OTUa

Group Diversity
Maximum modeled OTU species
Rarefaction
OTU
ACE
Chao1
Species Genus Species Genus Species Genus Species Genus
Baseline 588 387 601 393 1,102 572 1,011 545 621
FWD D1 451 295 456 297 741 376 738 373 478
FWD D3 529 345 531 346 843 435 836 438 571
FWD D5b 598 374 602 376 992 488 968 493 667
FWD D7b 534 343 537 344 874 435 854 419 577
RST D1 534 324 539 326 876 402 807 395 588
RST D3 458 304 461 305 756 402 746 413 485
RST D5b 468 298 470 299 776 369 763 368 501
RST D7b 413 267 415 268 633 320 646 312 438
a

Species designations are based upon 3% sequence divergence, and genus designations are based upon 5% sequence divergence. The data are the means from 3 animals per treatment, i.e., food and water deprivation control (FWD) and restraint stressor (RST), at each time point (i.e., after D1, D3, D5, and D7 under each condition).

b

Based upon Student's t test, there is a significant difference in the predictions between FWD D5 and D7 and RST D5 and D7 (P < 0.05) for all estimations.