Table 3.
Genetic variation in PGDH and risk of colorectal adenomaa
SNP | Genotypeb | Cases | Controls | OR | 95%CI | pc | p-trend |
---|---|---|---|---|---|---|---|
−1868G>A | GG | 359 | 437 | 1.00 | – | ||
GA or AA | 124 | 145 | 1.10 | 0.82-1.48 | 0.51 | NA | |
−1635G>A | GG | 121 | 164 | 1.00 | – | ||
GA | 238 | 288 | 1.22 | 0.89-1.66 | |||
AA | 122 | 128 | 1.31 | 0.91-1.88 | 0.30 | 0.14 | |
343C>A | CC | 412 | 511 | 1.00 | – | ||
CA or AA | 70 | 71 | 1.31 | 0.90-1.91 | 0.16 | NA | |
Gln52Gln | GG | 171 | 192 | 1.00 | – | ||
GA | 225 | 283 | 0.97 | 0.73-1.29 | |||
AA | 84 | 104 | 1.00 | 0.68-1.45 | 0.98 | 0.94 | |
782A>G | AA | 338 | 384 | 1.00 | – | ||
AG | 129 | 187 | 0.76 | 0.57-1.01 | |||
GG | 15 | 10 | 1.51 | 0.64-3.56 | 0.09 | 0.29 | |
1113G>A | GG | 374 | 464 | 1.00 | – | ||
GA or AA | 109 | 118 | 1.14 | 0.84-1.56 | 0.41 | NA | |
1543G>A | GG | 137 | 155 | 1.00 | – | ||
GA | 214 | 287 | 0.78 | 0.58-1.07 | |||
AA | 131 | 139 | 0.95 | 0.67-1.35 | 0.24 | 0.73 | |
3580G>A | GG | 297 | 337 | 1.00 | – | ||
GA | 161 | 220 | 0.84 | 0.64-1.10 | |||
AA | 25 | 25 | 1.15 | 0.62-.13 | 0.37 | 0.53 | |
9442A>G | AA | 223 | 298 | 1.00 | – | ||
AG | 210 | 217 | 1.21 | 0.92-1.58 | |||
GG | 50 | 66 | 0.95 | 0.62-1.46 | 0.32 | 0.63 | |
9691C>A | CC | 247 | 286 | 1.00 | – | ||
CA | 187 | 249 | 0.89 | 0.68-1.17 | |||
AA | 48 | 47 | 1.29 | 0.81-2.05 | 0.28 | 0.77 | |
12184A/- | AA | 375 | 427 | 1.00 | – | ||
A/- or -/- | 110 | 136 | 0.94 | 0.69-1.28 | 0.70 | NA | |
13316A>C | AA | 221 | 255 | 1.00 | – | ||
AC | 208 | 259 | 0.95 | 0.72-1.24 | |||
CC | 53 | 68 | 0.94 | 0.61-1.44 | 0.91 | 0.69 | |
13796C>T | CC | 273 | 322 | 1.00 | – | ||
CT | 177 | 217 | 0.99 | 0.76-1.30 | |||
TT | 33 | 43 | 0.90 | 0.54-1.50 | 0.92 | 0.77 | |
16362G>A | GG | 282 | 363 | 1.00 | – | ||
GA | 168 | 182 | 1.16 | 0.88-1.53 | |||
AA | 33 | 36 | 1.06 | 0.63-1.78 | 0.57 | 0.43 | |
17450A>G | AA | 394 | 445 | 1.00 | – | ||
AG or GG | 88 | 135 | 0.79 | 0.58-1.09 | 0.15 | NA | |
18349G>A | GG | 379 | 452 | 1.00 | – | ||
GA or AA | 104 | 129 | 0.96 | 0.71-1.31 | 0.81 | NA | |
19433G>A | GG | 243 | 275 | 1.00 | – | ||
GA | 201 | 259 | 0.91 | 0.70-1.19 | |||
AA | 37 | 48 | 0.88 | 0.54-1.44 | 0.76 | 0.47 | |
19979A>T | AA | 338 | 378 | 1.00 | – | ||
AT | 135 | 166 | 0.96 | 0.72-1.28 | |||
TT | 14 | 19 | 0.86 | 0.40-1.84 | 0.90 | 0.67 | |
20518A>G | AA | 160 | 208 | 1.00 | – | ||
AG | 228 | 267 | 1.08 | 0.81-1.44 | |||
GG | 95 | 107 | 1.12 | 0.78-1.62 | 0.79 | 0.50 | |
23196G>A | AA | 262 | 304 | 1.00 | – | ||
AG | 180 | 243 | 0.87 | 0.67-1.14 | |||
GG | 41 | 33 | 1.39 | 0.83-2.34 | 0.19 | 0.82 | |
26646G>A | GG | 320 | 381 | 1.00 | – | ||
GA | 141 | 175 | 0.98 | 0.74-1.30 | |||
AA | 22 | 26 | 1.09 | 0.58-2.06 | 0.95 | 0.94 | |
31659A>G | AA | 356 | 420 | 1.00 | – | ||
AG | 111 | 144 | 0.90 | 0.67-1.22 | |||
GG | 14 | 18 | 0.92 | 0.43-1.97 | 0.79 | 0.52 |
Adjusted for age and sex.
The homozygous variant and heterozygous genotypes are grouped together if <10 cases or <10 controls were of the homozygous variant genotype.
Likelihood ratio test of a model containing dummy variables for each SNP + age and sex vs. a model containing only age and sex.