Table 1.
Data collection | PHF8 (residues 1–447) | KIAA1718 (residues 1–488) | KIAA1718 (residues 92–488) | |||
---|---|---|---|---|---|---|
Cofactors | Zn2+, Fe2+, N-oxalylglycine |
Zn2+, Fe2+, N-oxalylglycine |
Zn2+, Fe2+, α-ketoglutarate |
Fe2+ | Fe2+, α-ketoglutarate |
Fe2+, N-oxalylglycine |
Peptide | H3(1–24)K4me3-K9me2 | |||||
Space group | P43212 | P212121 | P6122 | |||
Cell dimensions | (α= β= γ= 90°) | (α= β= γ= 90°) | (α= β= 90°, γ= 120°) | |||
a, b, c (Å) | 73.5, 73.5, 210.8 | 62.7, 125.6, 206.1 | 63.4, 125.2, 206.0 | 77.9, 77.9, 289.7 | 78.1, 78.1, 290.8 | 78.3, 78.3, 289.1 |
Resolution (Å) | 34.72–2.19 (2.27–2.19)a |
34.82–2.39 (2.48–2.39) |
34.54–2.89 (2.99–2.89) |
34.32–2.29 (2.37–2.29) |
34.40–2.79 (2.89–2.79) |
33.67–2.69 (2.79–2.69) |
Rmerge | 0.035 (0.647) | 0.055 (0.637) | 0.119 (0.557) | 0.089 (0.793) | 0.088 (0.381) | 0.085 (0.394) |
I/σI | 7.2 (2.3) | 9.7 (1.7) | 16.5 (4.0) | 21.9 (4.2) | 15.5 (4.1) | 13.3 (2.6) |
Completeness (%) | 100.0 (99.9) | 94.8 (81.3) | 97.6 (95.6) | 99.8 (100) | 99.5 (99.3) | 98.3 (86.3) |
Redundancy | 6.2 (5.7) | 8.0 (4.2) | 7.8 (7.4) | 11.1 (11.9) | 7.0 (7.3) | 14.4 (8.0) |
Refinement | ||||||
Resolution (Å) | 2.19 | 2.39 | 2.89 | 2.29 | 2.79 | 2.69 |
No. reflections | 28,629 | 57,397 | 35,289 | 23,158 | 12,680 | 14,477 |
Rwork/Rfree | 0.217/0.255 | 0.216/0.245 | 0.215/0.253 | 0.222/0.258 | 0.203/0.269 | 0.216/0.267 |
No. atoms | ||||||
Protein | 3,564 | 7,084 | 7,145 | 2,922 | 2,925 | 2,931 |
Heterogen | 56 | 17 | 30 | 4 | 14 | 14 |
Water | 206 | 329 | 166 | 111 | 50 | 38 |
B-factors (Å2) | ||||||
Protein | 25.7 | 41.0 | 32.7 | 42.9 | 47.3 | 53.9 |
H3 peptide | 22.1 | |||||
Cofactor | 32.0 | 75.5 | 82.2 | 57.0 | 69.3 | 92.6 |
Water | 29.8 | 37.5 | 22.6 | 47.1 | 40.7 | 41.0 |
R.m.s. deviations | ||||||
Bond lengths (Å) | 0.006 | 0.006 | 0.008 | 0.009 | 0.007 | 0.006 |
Bond angles (°) | 1.2 | 1.3 | 1.3 | 1.4 | 1.3 | 1.3 |
Values in parentheses are for highest-resolution shell.