Table 5.
Tools and Database not available in CoBaltDB
| Program | Reference | Analytical method | CoBaltDB features prediction group(s) | |||
|---|---|---|---|---|---|---|
| SpLip | [174] | Weight matrix | LIPO | (only Spirochaetal) | ||
| PROTEUS2 | [175] | Multi-Methods | SEC | αTMB | βBarrel | |
| PRED-TMR2 | [176] | NN | αTMB | |||
| PRODIV-TMHMM | [72] | Multi HMM | αTMB | |||
| S_TMHMM | [72] | HMM | αTMB | |||
| TransMem | [69] | NN | αTMB | |||
| BPROMPT | [177] | Bayesian Belief Network | αTMB | |||
| orienTM | [178] | Statistical analysis | αTMB | |||
| APSSP2 | [179] | Multi-Methods | Secondary structure | |||
| PRALINE_TM | [180] | Alignment, tools consensus | Secondary structure | |||
| OPM (DB) | [181] | Multi-Methods | Membrane orientation | |||
| MP_Topo (DB) | [182] | Experimental | TMB | |||
| PDBTM (DB) | [183] | TMDET algorithm | TMB | |||
| TMB-HMM | A.Garrow | HMM, SVM | βBarrel | |||
| TMBETA-SVM | [86] | SVM | βBarrel | |||
| TMBETA-GENOME (DB) | [184] | Multi-Methods | βBarrel | |||
| PredictProtein | [185] | Alignment, Multi-Methods | Localization | |||
| EcoProDB (DB) | [186] | Identification on 2D gels | Localization | (only E.coli) | ||
| LOCTARGET (DB) | [187] | Multi-Methods | Localization | |||
| DBMLoc (DB) | [188] | _ | Localization | |||
NN: Neural Network, HMM: Hidden Markov Model, SVM: Support Vector Machine