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Investigation of Non-HBD Gaps < 1 cM between HBD Segments Detected with BEAGLE
| Gap No. | Platform on which Gap Was Found | Size of Gap (cM) | Disappeared when Doubling the Number of Runs | No. of Heterozygous Genotypes on Platform with Gap | No. of Heterozygous Genotypes on Alternate Platform |
|---|---|---|---|---|---|
| 1 | Affymetrix | 0.17 | No | 3 | 0 |
| 2 | Affymetrix | 0.63 | No | 3 | 0 |
| 3 | Illumina | 0.38 | No | 3 | 0 |
| 4 | Illumina | 0.27 | No | 5 | 2 |
| 5 | Illumina | 0.58 | Yes | 0 | 0 |
