Table 2.
Data Collection and Refinement Statistics
Human arginase I complex | nor-NOHA | NOHA | L-Lysine |
---|---|---|---|
Data Collection | |||
Resolution, Å | 50.0–1.55 | 50.0–2.04 | 50.0–1.90 |
Total/Unique reflections measureda | 135232/90987 | 81841/40118 | 117869/49010 |
Rmergea,b | 0.032 (0.302) | 0.089 (0.186) | 0.081 (0.433) |
I/σ(I)a | 14.4 (2.0) | 28.9 (8.7) | 17.4 (2.5) |
Completeness (%)a | 98.2 (96.2) | 98.6 (91.8) | 97.1 (98.9) |
Refinement | |||
Reflections used in refinement/test set | 85281/4185 | 39744/1587 | 46106/1897 |
Rtwina,c | 0.144 | 0.124 | 0.155 |
Rtwin/freea,c | 0.178 | 0.174 | 0.204 |
Protein atomsd | 4782 | 4782 | 4782 |
Water moleculesd | 302 | 269 | 209 |
Inibitor atomsd | 24 | 26 | 20 |
Manganese ionsd | 4 | 4 | 4 |
R.m.s. deviations | |||
Bond lengths, Å | 0.006 | 0.006 | 0.006 |
Bond angles,° | 1.34 | 1.29 | 1.33 |
Average B-factors, Å2 | |||
Main chain | 18 | 26 | 23 |
Side chain | 20 | 28 | 26 |
Manganese ions | 13 | 17 | 18 |
Inhibitors | 16 | 41 | 27 |
Solvent | 23 | 30 | 25 |
Number in parentheses refer to the outer 0.1 Å shell of data.
Rmerge = Σ|I−〈I〉|/ΣI, where I is the observed intensity and 〈I〉 is the average intensity calculated for replicate data.
Rtwin = Σ|[|Fcalc/A|2+|Fcalc/B|2]1/2−|Fobs||/Σ|Fobs| for reflections contained in the working set. |Fcalc/A| and |Fcalc/B| are the structure factor amplitudes calculated for the separate twin domains A and B, respectively. Rtwin underestimates the residual error in the model over the two twin-related reflections by a factor of approximately 0.7. The same expression describes Rtwin/free, which was calculated for test set reflections excluded from refinement.
Per asymmetric unit.