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. 2010 Apr 8;6(4):e1000738. doi: 10.1371/journal.pcbi.1000738

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Marcos et al.

This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.

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Motion of active site residues between open and closed conformers along the 1^st ANM mode accessible to the open form. The position of these residues in different conformations is shown: open conformation (yellow), intermediate positions (green and blue) and closed conformation (atom-colored). (A) Color-coded ribbon diagram for motions along the 1^st mode (generated with the ANM web server [25] and Pymol [64]). (B) Movement of catalytic residues with respect to the ATP analogue. (C) Movement of ATP binding residues with respect to the nucleotide. (D) Movement of NAG binding residues with respect to NAG.