Table 4.
In silico analysis of the available sequences of the genes detected in L. garvieae by CGH
| Gene ID | GenBank accession number of L. garvieae sequence | L. garvieae strain | Similarity with S. pneumoniae TIGR4 gene (%) | Similarity with array probe (%) |
|---|---|---|---|---|
| SP1508 | AX111128 | from patent WO0123604 | 82 | 82 |
| SP0896 | AB024532 | SA8201 | 80 | 79 |
| SP0766 | AM490328 | JIP 31-90 (2) | 71 | 79 |
| AJ387925 | CIP 102507 T | 70 | 70 | |
| AJ387923 | E. serolicida ATCC49156 | 70 | 70 | |
| SP04000 | AB024531 | SA8201 | 74 | - |
| SP1489 | AX109994 | from patent WO0123604 | 80 | 79 |
| SP1219 | AB364641 | 20-92 | 84 | 86 |
| AB364640 | Lc.1236 | 84 | 85 | |
| AB364639 | Lc. 925 | 85 | 85 | |
| AB364638 | Lc. 881 | 84 | 84 | |
| AB364637 | Lc. 337 | 85 | 85 | |
| AB364633 | LMG9472 | 85 | 85 | |
| AB364632 | ATCC43921 | 84 | 84 | |
| AB364627 | G50202 | 84 | 84 | |
| AB364626 | KGLA5224 | 84 | 84 | |
| AB364625 | EH5803 | 83 | 83 | |
| AB364624 | KG9408 | 84 | 84 |
Results for the S. pneumoniae TIGR4 array based-CGH